View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_141 (Length: 318)
Name: NF11982A_low_141
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_141 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 38831387 - 38831081
Alignment:
| Q |
1 |
ggaatcggatataaattcgtcgggggcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaagtagtt |
100 |
Q |
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| T |
38831387 |
ggaatcggatataaattcgtcgggtgcaaatagcaaatcttgtaatgatgggaatatggttagtattgagagaaaattacaagatgaagagaaagtagtt |
38831288 |
T |
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| Q |
101 |
tattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgagaaaggaa |
200 |
Q |
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| T |
38831287 |
tattcttcagattcaagttcgagtcgtgtggaagagataattagcaaaagagatgaatccgttgtgccgaatccattgcctaaggaaggtgagaaaggaa |
38831188 |
T |
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| Q |
201 |
gaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagttaaggtgagttactatatatataattgctatttaatttggtatatgtttgt |
300 |
Q |
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| T |
38831187 |
gaaaatcatcatctcaatcaaagaataatcctcatgggaagagaaaagtgaaggtgag-----------ataattgctatttaatttggtatatgtttgt |
38831099 |
T |
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| Q |
301 |
taattagttacaaaccct |
318 |
Q |
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|||||||||||||||||| |
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| T |
38831098 |
taattagttacaaaccct |
38831081 |
T |
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