View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_143 (Length: 317)
Name: NF11982A_low_143
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_143 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] scaffold0707 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 24035016 - 24035328
Alignment:
| Q |
5 |
cacatctcatgctatcttggaaaacgagtataccagccgtcaagttcgttgtacctttccccgtgcatcttttgctcaaaaatccatccatcaccgtttc |
104 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24035016 |
cacatctcatgctatcttggaaaacgatcacaccagccgtcaagttcgttgtacccttcccggtgcatcttttgctcaaaaatccatccatcaccgtttc |
24035115 |
T |
|
| Q |
105 |
cagcaacaaatcccatgattttgagcataattgtaggattgttggttcctgtaatggattgctttgcttgcttttcaattctgaaacagagacatcaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24035116 |
cagcaacaaatcccatgattttgagcataattgtaggattgttggttcctgtaatggattgctttgcttgcttttcaattctgaaacagagacatcaaaa |
24035215 |
T |
|
| Q |
205 |
ccaaagaattggttacgtttctggaaccctgccaccaggacaagctctaaaaatttagggtcattccgttatagaacccctcgtcgctatgataacagct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24035216 |
ccaaagaattggttacgtttctggaaccctgccaccaggacaagctctaaaaatttagggtcattccgttatagaacccctcgtcgctatgataacagct |
24035315 |
T |
|
| Q |
305 |
atggtttgtcctg |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24035316 |
atggtttgtcctg |
24035328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 24001516 - 24001561
Alignment:
| Q |
57 |
acctttccccgtgcatcttttgctcaaaaatccatccatcaccgtt |
102 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24001516 |
acctgtccctgtgcatcttttgctcaaagatccatccatcaccgtt |
24001561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 24001593 - 24001649
Alignment:
| Q |
134 |
attgtaggattgttggttcctgtaatggattgctttgcttgcttttcaattctgaaa |
190 |
Q |
| |
|
|||||| | |||||||||| |||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
24001593 |
attgtatggttgttggttcatgtaatggattgatctgcttgcttttccattctgaaa |
24001649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 24001675 - 24001712
Alignment:
| Q |
207 |
aaagaattggttacgtttctggaaccctgccaccagga |
244 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
24001675 |
aaagagttggtttcgtttctggaaccctgccaccagga |
24001712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 24009860 - 24009896
Alignment:
| Q |
208 |
aagaattggttacgtttctggaaccctgccaccagga |
244 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
24009860 |
aagacttggtttcgtttctggaaccctgccaccagga |
24009896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 23086146 - 23086189
Alignment:
| Q |
143 |
ttgttggttcctgtaatggattgctttgcttgcttttcaattct |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
23086146 |
ttgttggttcctgcaatggattgctttgcttgcttttccattct |
23086189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 4784 - 4826
Alignment:
| Q |
143 |
ttgttggttcctgtaatggattgctttgcttgcttttcaattc |
185 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
4784 |
ttgttggttcctgcaacggattgctctgcttgcttttcaattc |
4826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 33568390 - 33568432
Alignment:
| Q |
143 |
ttgttggttcctgtaatggattgctttgcttgcttttcaattc |
185 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
33568390 |
ttgttggttcctgcaacggattgctctgcttgcttttcaattc |
33568432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University