View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_148 (Length: 314)
Name: NF11982A_low_148
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_148 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 314
Target Start/End: Complemental strand, 885821 - 885531
Alignment:
| Q |
23 |
tctctttgtgtgttgtccaaacatcacacaaagagtgggagagaaatgagaggaagtgtatatttgtatatatacataatgtgtggagtatatgagaatt |
122 |
Q |
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| T |
885821 |
tctctatgtgtgttgtccaaacatcacacaaagagtgggagagaaatgagaggaagtgtatatt-gtatatatacataatgtgtggagtatatgagaatt |
885723 |
T |
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| Q |
123 |
gatgtgcgaaatgtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaattgcttctaccttttgttaactagtatttc |
222 |
Q |
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| T |
885722 |
gatgtgcgaaatgtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaattgcttctaccttttgttaactagtatttc |
885623 |
T |
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| Q |
223 |
tattactatatgtggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatcttacattttgttaatgtacataa |
314 |
Q |
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| T |
885622 |
tattactatatgtggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatctttcattttgttaatgtacataa |
885531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 1849159 - 1849107
Alignment:
| Q |
247 |
attatgcatttcaaggcctaataaaaggg-gaaaatctagttcatcttacatt |
298 |
Q |
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| T |
1849159 |
attatgcatttcaaggcctaatataagggaaaaaaactagttcatctttcatt |
1849107 |
T |
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