View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_151 (Length: 313)

Name: NF11982A_low_151
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_151
NF11982A_low_151
[»] chr8 (3 HSPs)
chr8 (8-308)||(4146073-4146373)
chr8 (268-308)||(8018266-8018306)
chr8 (221-308)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (216-308)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (221-308)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (231-308)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (233-308)||(31525096-31525171)
chr1 (231-308)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (221-308)||(11106952-11107039)
chr5 (217-296)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 4146073 - 4146373
Alignment:
Q  8 ttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146073 ttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagc 4146172  T
Q  108 cctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagannnnn 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  4146173 cctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagattttt 4146272  T
Q  208 nngttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaacttt 307  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146273 ttgttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaacttt 4146372  T
Q  308 t 308  Q
    |    
T  4146373 t 4146373  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 8018306 - 8018266
Alignment:
Q  268 atcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  8018306 atcttttgaattttcttcggagtgatgcagctgaaactttt 8018266  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 17654787 - 17654700
Alignment:
Q  221 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||||| || |||||||||||||||||||| | |||| || |  || ||| ||||||||||||| ||||| ||||| ||| |||||||    
T  17654787 tgcctcatcaaactttgagtttctttgtcatgagtcttctccatcggatcgtttgaattttctttggagtgatgcatctgaaactttt 17654700  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 216 - 308
Target Start/End: Complemental strand, 41430474 - 41430382
Alignment:
Q  216 tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||||||||||||||| |||||||||||||||||    
T  41430474 tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcggagtgatgcagctggaactttt 41430382  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 12734679 - 12734766
Alignment:
Q  221 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  12734679 tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcggagtgatgcagctggaactttt 12734766  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 30269706 - 30269629
Alignment:
Q  231 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||||||||||||||||||||| |||| || | || |||||||| || |||||||||||| |||||||||||||||||    
T  30269706 aactttgagtttctttgtcacgagtctcctccaacaaatcttttcaactttcttcggagtgatgcagctggaactttt 30269629  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 31525096 - 31525171
Alignment:
Q  233 ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| ||| ||||||||||| |||||    
T  31525096 ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcgcagtgatgcagctggagctttt 31525171  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 44269737 - 44269660
Alignment:
Q  231 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||||||||||||||||||||| |||| || |   | ||||||||||| ||||||| ||| |||||||||||||||||    
T  44269737 aactttgagtttctttgtcacgagtctcctccagtggatcttttgaatcttcttcgaagtgatgcagctggaactttt 44269660  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 11106952 - 11107039
Alignment:
Q  221 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 308  Q
    |||||| || |||| ||||||||||||| ||| |||| || | ||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  11106952 tgcctcatcaaactctgagtttctttgttacgagtctcctccaacggatcttttgaatcttcttcggagtgatgtagttggaactttt 11107039  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 42367667 - 42367588
Alignment:
Q  217 ttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgca 296  Q
    |||||| ||| || |||||| ||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||| |||||    
T  42367667 ttgatgactcatcaaactttaagtttctttgtcaagagtcttcttcgacggatcttttaagttttctttggagtgatgca 42367588  T

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