View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_158 (Length: 305)
Name: NF11982A_low_158
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_158 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 7278918 - 7278625
Alignment:
| Q |
13 |
agaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggaggggtgtgaagaggagaatgagggtggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7278918 |
agaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaat |
7278819 |
T |
|
| Q |
113 |
aaaattgaagctttggtgaatgaggatggcggggtgaattgtatggag-aagcagagagggggtgtgaagagaagaatgagggaggtgaaaaaatggggc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7278818 |
aaaattgaagctttggtgaatgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatgggac |
7278719 |
T |
|
| Q |
212 |
ctttgatgaatgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278718 |
ctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
7278625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 7374921 - 7375214
Alignment:
| Q |
13 |
agaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggaggggtgtgaagaggagaatgagggtggtaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7374921 |
agaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtggtaat |
7375020 |
T |
|
| Q |
113 |
aaaattgaagctttggtgaatgaggatggcggggtgaattgtatggag-aagcagagagggggtgtgaagagaagaatgagggaggtgaaaaaatggggc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
7375021 |
aaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatgggac |
7375120 |
T |
|
| Q |
212 |
ctttgatgaatgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375121 |
ctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
7375214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
82 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
138 |
Q |
| |
|
||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
|
|
| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
82 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
138 |
Q |
| |
|
||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
|
|
| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University