View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_16 (Length: 451)
Name: NF11982A_low_16
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_16 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 40821517 - 40821932
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40821517 |
ctttggagataagagtttcagtgtcctttatgtactgggatgatgtgatgttggttatggcaatactaacttgtaacaaagtgcaaaacaaaatgaacag |
40821616 |
T |
|
| Q |
120 |
aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40821617 |
aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgattt |
40821716 |
T |
|
| Q |
220 |
gagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
40821717 |
gagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcac |
40821816 |
T |
|
| Q |
320 |
tacttatttaggttatcannnnnnnnnnnnnnnnnnnnncctagaccgtcatttttatttcatgaaatcaaatatgtatcctctcaaatctccaagaatc |
419 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
40821817 |
tacttatttaggttatca-cttttcttttcttttttttccctagaccgtcatttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatc |
40821915 |
T |
|
| Q |
420 |
atttctttattcaaaat |
436 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40821916 |
atttctttattcaaaat |
40821932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 40826201 - 40826306
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag |
119 |
Q |
| |
|
||||||||| |||||||| | |||||| ||| |||| |||||||||||| || ||| |||||||||| ||||| |||||||| ||| ||| |||| |
|
|
| T |
40826201 |
ctttggagagtagagtttcagggtccttgatgaattgagatgatgtgatggtgtctattgcaatactaaattgtagggaatagcaacacagaataaacaa |
40826300 |
T |
|
| Q |
120 |
aacaga |
125 |
Q |
| |
|
|||||| |
|
|
| T |
40826301 |
aacaga |
40826306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 20292311 - 20292021
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag |
119 |
Q |
| |
|
||||||||||||||||||| | |||||| ||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20292311 |
ctttggagataagagtttcagcgtccttgatgaattgggatgatgtgatggtgtttatggcaatattaacttgtaacaaatagcaaaacaaaatgaacag |
20292212 |
T |
|
| Q |
120 |
aacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgattt |
219 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
20292211 |
aacagagagcatatttga------actgaa--acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgattt |
20292121 |
T |
|
| Q |
220 |
gagatttc---cttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcattt |
316 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |||| ||| |||| ||||| |||| ||| |||||| ||||| |
|
|
| T |
20292120 |
gagatttccttcttaacgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacattt |
20292025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 20301502 - 20301393
Alignment:
| Q |
31 |
agagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagca |
130 |
Q |
| |
|
|||||||| | |||||| ||| ||||||||||||||||| || ||| | |||||||| ||||||||||| |||||| |||||||| |||| ||| || |
|
|
| T |
20301502 |
agagtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacacgtaacaaataggaaaacagaatgaacaaaacaaagaaca |
20301403 |
T |
|
| Q |
131 |
tatttgaaca |
140 |
Q |
| |
|
||||||||| |
|
|
| T |
20301402 |
gatttgaaca |
20301393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 20064893 - 20064991
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaaca |
118 |
Q |
| |
|
||||||||| || ||||| | |||||| ||| ||||||||||||||||| || ||| | |||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
20064893 |
ctttggagagtagtgtttcagggtccttgatgaattgggatgatgtgatggtgtctataccgatactaacatgtaacaaatacaaaaacacaatgaaca |
20064991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 20229352 - 20229247
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag |
119 |
Q |
| |
|
|||||||||| |||||||| | ||| || || |||| |||||||||||| || ||| ||| |||||| |||| |||||||||| |||||||||| | |
|
|
| T |
20229352 |
ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaataa |
20229253 |
T |
|
| Q |
120 |
aacaga |
125 |
Q |
| |
|
|||||| |
|
|
| T |
20229252 |
aacaga |
20229247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 20261935 - 20261830
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag |
119 |
Q |
| |
|
|||||||||| |||||||| | ||| || || |||| |||||||||||| || ||| ||| |||||| |||| |||||||||| |||||||||| | |
|
|
| T |
20261935 |
ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaatac |
20261836 |
T |
|
| Q |
120 |
aacaga |
125 |
Q |
| |
|
|||||| |
|
|
| T |
20261835 |
aacaga |
20261830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
133 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
208 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||| | | | | ||||||||| ||||||||||||||||||||| |
|
|
| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 20170431 - 20170527
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa |
116 |
Q |
| |
|
|||||||||| |||||||| | ||| || || |||| |||||||||||| || ||| ||| |||||| |||| |||||||||| |||||||||| |
|
|
| T |
20170431 |
ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa |
20170527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 20172424 - 20172520
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa |
116 |
Q |
| |
|
|||||||||| |||||||| | ||| || || |||| |||||||||||| || ||| ||| |||||| |||| |||||||||| |||||||||| |
|
|
| T |
20172424 |
ctttggagattagagtttcagggtctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa |
20172520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 20296737 - 20296617
Alignment:
| Q |
20 |
ctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacag |
119 |
Q |
| |
|
|||| ||||| |||||||| | |||||| ||| ||||||| ||||| || || |||||||||||| | |||||||||| |||||||| |||| | | |
|
|
| T |
20296737 |
cttttgagattagagtttcagggtccttgatgaattgggaagatgttatagtgtctatggcaatactcatgtgtaacaaattgcaaaacagaatggataa |
20296638 |
T |
|
| Q |
120 |
aacagagagcatatttgaaca |
140 |
Q |
| |
|
|||||| | || ||||||||| |
|
|
| T |
20296637 |
aacagaaaacagatttgaaca |
20296617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 135558 - 135603
Alignment:
| Q |
97 |
aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac |
142 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || ||||||||||| |
|
|
| T |
135558 |
aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac |
135603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University