View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_160 (Length: 301)
Name: NF11982A_low_160
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_160 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 32650774 - 32650608
Alignment:
| Q |
21 |
agcatctcaattcgtttactctttcctttcattaatttgcattatcgccgtgataaatggatcagaattgttctgatatttacacaaatataaacaaacc |
120 |
Q |
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| T |
32650774 |
agcatctcaattcgtttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaacc |
32650675 |
T |
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| Q |
121 |
cctcatgaaatgatttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
187 |
Q |
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| T |
32650674 |
cctcatgaaatgatttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
32650608 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 12537407 - 12537299
Alignment:
| Q |
183 |
attcctaacgcccctgatgtt---tactttcttccaaggaagttttaccacacatttgagaagtccttgccaaaatctgatgtcaactcaggatttttgg |
279 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
12537407 |
attcctaacgcccctgatgttgtttactttcttccaaggaagttttaccacacatttgagaagtagttgccaaaatctgatgtcaactcaggttttttgg |
12537308 |
T |
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| Q |
280 |
tatgatgtc |
288 |
Q |
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| T |
12537307 |
tatgatgtc |
12537299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 183 - 288
Target Start/End: Original strand, 29175 - 29283
Alignment:
| Q |
183 |
attcctaacgcccctgatgtt---tactttcttccaaggaagttttaccacacatttgagaagtccttgccaaaatctgatgtcaactcaggatttttgg |
279 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
29175 |
attcctaacgcccttgatgttgtttactttcttccaaggaagttttaccactcatttgagaagtcgttgccaaaatctgatgtcaactcaggttttttgg |
29274 |
T |
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| Q |
280 |
tatgatgtc |
288 |
Q |
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| T |
29275 |
tatgatgtc |
29283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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