View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_168 (Length: 297)
Name: NF11982A_low_168
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_168 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 32193669 - 32193960
Alignment:
| Q |
7 |
cagagatgaaggaaacaaaattgaaatgctaaaatgaaaagacaacaaa-ttaagtaattattttaactttgaaatgtaaaaccaatttccaaacattga |
105 |
Q |
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| T |
32193669 |
cagaaatgaaggaaacaaaattgaaatgctaaaatgaaaagacaccaaaattaagtaattattttaactttgaaatgtaaaaccaatttccaaacattga |
32193768 |
T |
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| Q |
106 |
ttcaatcttcgtcgcaagtttcttgctattatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccatgactacagtggcctcc |
205 |
Q |
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| T |
32193769 |
ttcaatcttcgtcgcaagtttcttgctattatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccatgactacagtggcctcc |
32193868 |
T |
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| Q |
206 |
accgagtgccactgtggacgcaggttttcctgattgttatcggtgtactttttggagtggtggtcattgcactcattgtctattgggtgata |
297 |
Q |
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| T |
32193869 |
accgagtgccactgtggacgcaggttttcctgattgttctcggtgtactttttggagtggtggtcattgcactcattgtctattgggtgata |
32193960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 135 - 297
Target Start/End: Original strand, 32197478 - 32197640
Alignment:
| Q |
135 |
tatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccatgactacagtggcctccaccgagtgccactgtggacgcaggttttc |
234 |
Q |
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| T |
32197478 |
tatgaagagcccaaggtcgaatgtccttccccacatatattttagagaccaccatgactatagtggcctccatcgagtgccactgtggacgcaggttctc |
32197577 |
T |
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| Q |
235 |
ctgattgttatcggtgtactttttggagtggtggtcattgcactcattgtctattgggtgata |
297 |
Q |
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| T |
32197578 |
ctgattgttctcggtgtagtttttggagcggtggtcattgcactcattgtctgttgggtgata |
32197640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 41177351 - 41177150
Alignment:
| Q |
27 |
ttgaaatgctaaaatg-aaaagacaacaaattaagtaattattttaactttgaaatgtaaaaccaatttccaaacattgattcaatcttcgtcgcaagtt |
125 |
Q |
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||||||||||||||| |||| ||||||| | || ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |
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| T |
41177351 |
ttgaaatgctaaaatttaaaaaacaacaactcaa-taatttttttaactttgaaatgtaaaaccaatttccaaacactgattcaatcctcgtcgcaggtt |
41177253 |
T |
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| Q |
126 |
tcttgctattatgaagagcccaaggtcgaatgtctttccccacatagattttggagaccaccatgactacagtggcctccaccgagtgccactgtggacg |
225 |
Q |
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|||| |||||||||||||| |||| ||||| || ||||||| | ||| |||||||||||||| |||||||||| |||||| |||||||| || |||||| |
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| T |
41177252 |
tcttactattatgaagagctcaagaccgaatatccttccccatagagactttggagaccaccacgactacagtgacctccatcgagtgccgctatggacg |
41177153 |
T |
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| Q |
226 |
cag |
228 |
Q |
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||| |
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| T |
41177152 |
cag |
41177150 |
T |
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