View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_169 (Length: 297)
Name: NF11982A_low_169
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_169 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 38 - 291
Target Start/End: Original strand, 15755209 - 15755462
Alignment:
| Q |
38 |
gaaagagaatgttagactaagtattgttatttttctcttaccttcaaatattgattattgtttgtatacatgtgcaggttccttaataaggcatgtgtgg |
137 |
Q |
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| T |
15755209 |
gaaagagagtgttagactaagtattgttatttttctcttattttaaaatattaattcttgtttgtatacatgtgcaggttccttaacaaggcatgtgtgg |
15755308 |
T |
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| Q |
138 |
gcactggttcaagtactagtaatgaatggatggtatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatccctatttgggctgctac |
237 |
Q |
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| T |
15755309 |
acactggttcaagtactagtaatgaatggatgttatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatacctatttgggttgccac |
15755408 |
T |
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| Q |
238 |
atttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaagg |
291 |
Q |
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| T |
15755409 |
atttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaagg |
15755462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 110 - 291
Target Start/End: Original strand, 15766150 - 15766331
Alignment:
| Q |
110 |
tgcaggttccttaataaggcatgtgtgggcactggttcaagtactagtaatgaatggatggtatgcacaataacacaagtagaggaaaccaaacaaatcc |
209 |
Q |
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| T |
15766150 |
tgcagattccttaacaaggcatgtgtggacactggttcaagtgcaagtgatgagtggatgttatgcacagtaacacaagtggaagaaaccaaacaaatcc |
15766249 |
T |
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| Q |
210 |
ttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaagg |
291 |
Q |
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| T |
15766250 |
ttagcttagtccctatttgggttgcaacatttattccaagtgcaatgatagctcaaataaataccctttttgtaaaacaagg |
15766331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 274
Target Start/End: Original strand, 15779261 - 15779429
Alignment:
| Q |
106 |
catgtgcaggttccttaataaggcatgtgtgggcactggttcaagtactagtaatgaatggatggtatgcacaataacacaagtagaggaaaccaaacaa |
205 |
Q |
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| T |
15779261 |
catgtgtaggttccttaataaggcttgtgtggacactggttcaagaactagtagcgagtggatgatatgtcctataacacaagtagaggagaccaaacaa |
15779360 |
T |
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| Q |
206 |
atccttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaatacc |
274 |
Q |
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| T |
15779361 |
atcctaagtgtaatccctatttgggttgctacatttattcctagtgcaatgattgctcagataaatacc |
15779429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 15729682 - 15729726
Alignment:
| Q |
229 |
ggctgctacatttattccaagtgcaatgattgctcaaataaatac |
273 |
Q |
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| T |
15729682 |
ggctactacattaattcctagtacaatgattgctcaaataaatac |
15729726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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