View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_17 (Length: 449)
Name: NF11982A_low_17
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 25566290 - 25565858
Alignment:
| Q |
16 |
accacaatccaatgttccaatgtttattgttcaaactagacaaactagatttggattatccattccatttgcaaacaataacatcatcaccacatgacac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25566290 |
accacaatccaatgttccaatgtttattgttcaaactagacaaactagatttggtttatccgttccatttgcaaacaataacatcatcaccacatgacac |
25566191 |
T |
|
| Q |
116 |
aatattacatccttggatatgcctagcatggcttcccctcttctgctcccactttgtcagtcctttcactttctcttttcctcactatccaaaaatgcat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
25566190 |
aatattacatccttggatatgcctagcatggcttcccctcttctgcttccactttgtaagtcctttcactttctctcttcctcactgtccaaaaatgcat |
25566091 |
T |
|
| Q |
216 |
aatattgtgtgattgctgtaat-------aatgttcatttatatttgatttgttccnnnnnnnnnnatagattctacttgtggtaaaattccttctctta |
308 |
Q |
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|||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25566090 |
aatattgtgtgattgctgtaatcaagttcactgttaatttatatttgatttgttcc--ttttttttatagattctacttgtggtaaaattccttctctta |
25565993 |
T |
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| Q |
309 |
ctgcttctcaaagcatttctgttgagaaacttagaagatttgctcttaaagtgaaatccacagagacaagggaatgcactgctaatgatatttttaatac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25565992 |
ctgcttctcaaagcatttctgttgagaaacttagaagatttgctcttaaagtcaagtccacagagacaagggaatgcactgctaatgatatttttaatac |
25565893 |
T |
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| Q |
409 |
caattcacgtagagactttcttggattagcattag |
443 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
25565892 |
caattcacgtagagactttcttggattagcattag |
25565858 |
T |
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