View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_170 (Length: 296)
Name: NF11982A_low_170
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_170 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 40877126 - 40877401
Alignment:
| Q |
14 |
gaagtcctaaatagaaactttattttagaaataatgcatctaaaatctttaaattttagaaattgatttgttttacttcaaatttatcacatattttcat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40877126 |
gaagtcctaaatagaaactttattttagaaataatgcatctaaaatctttaaattttagaaattgatttgttttactttaaatttatcacatattttcat |
40877225 |
T |
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| Q |
114 |
ttttagcttcttaataaatgttcttaggacactgattaacttgacctccttctaataaaagtaatg--nnnnnnnnggtaccgtataattttttatttga |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||| |
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| T |
40877226 |
ttttagcttcttaataaatgttcttaggacaccgattaacttga---ccttttaataaaagtaatgttttttttttggtacggtataattttttatttga |
40877322 |
T |
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| Q |
212 |
aataaaacgattatagtaagtggtgggactatcatttttcttcgtgctctttctattgatatcgatcattagagcatag |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40877323 |
aataaaacgattatagtaagtggtgggactatcatttttcttcgtgatctttctattgatatcgatcattagagcatag |
40877401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 35507254 - 35507141
Alignment:
| Q |
14 |
gaagtcctaaatagaaactttattttagaaataatgcatctaaaatctttaaattttagaaattgatttgttttacttcaaatttatcacatattttcat |
113 |
Q |
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||||||| ||| ||||||||||| || |||||| ||||| ||| | || |||| | |||||||||| || |||||| | |||||||||| ||||| ||| |
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| T |
35507254 |
gaagtccaaaaaagaaactttatcttggaaatagtgcatttaatacctctaaactctagaaattgactttttttaccttgaatttatcacttatttccat |
35507155 |
T |
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| Q |
114 |
ttttagcttcttaa |
127 |
Q |
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| T |
35507154 |
ttttagcttcttaa |
35507141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 9045145 - 9045225
Alignment:
| Q |
47 |
atgcatctaaaatctttaaattttagaaattgatttgttttacttcaaatttatcacatattttcatttttagcttcttaa |
127 |
Q |
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|||||| ||| ||||||||| |||||||||| | || |||||||| ||||||||||| ||||| ||||||| |||||||| |
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| T |
9045145 |
atgcatttaatatctttaaactttagaaattaactttttttactttaaatttatcacttatttctatttttaccttcttaa |
9045225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 32292755 - 32292858
Alignment:
| Q |
22 |
aaatagaaactttattttagaaataatgcatctaaaatctttaaattttagaaattgatttgttttacttcaaatttatcacatattttcatttttagct |
121 |
Q |
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||||| ||| ||||| || ||||| || ||| ||| | ||||||| |||| |||||||||| |||||| | ||||||||||| ||||| |||| |||||| |
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| T |
32292755 |
aaataaaaaatttatctttgaaattattcatttaacacctttaaacttta-aaattgattt-ttttaccttaaatttatcacttatttccattcttagct |
32292852 |
T |
|
| Q |
122 |
tcttaa |
127 |
Q |
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|||||| |
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|
| T |
32292853 |
tcttaa |
32292858 |
T |
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