View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_178 (Length: 291)
Name: NF11982A_low_178
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_178 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 12035521 - 12035797
Alignment:
| Q |
9 |
gagatgaatgggatgactagtaaacctcttttgattcctgtagtaccaaataatattgaagcaatatataactgcaactagaaccaccatcttgcaaaga |
108 |
Q |
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| T |
12035521 |
gagaggaatgggatggctagtaaacctcttttgattcctgcagtacaaaataatattgaagcaatatataactgcaactagaaccaccatcttgcaaaga |
12035620 |
T |
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| Q |
109 |
ggagaattttgtctgttgcatatatctagcgcctcggtaatagatgtgaaattgcagagagtatttatcttagagctgagccaatgccaaattttcttag |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
12035621 |
ggagaattttgtttgttgcatatatctagcgcctcggtaatagatgtgaaattgtagagagtatttatcttagagctgagcaaatgccaaattttctaag |
12035720 |
T |
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| Q |
209 |
ccaaactgcattcaaaaaacaaatgctgaaaagattcaccttgagcactatacagactgcacatggatggaaattga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12035721 |
ccaaactgcattcaaaaaacaaatgctgaaaagattcaccttgagcactacacagactgcacatggatggaaattga |
12035797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 22162751 - 22163007
Alignment:
| Q |
29 |
taaacctcttttgattcctgtagtaccaaataatattgaagcaatatataactgcaactagaaccaccatcttgcaaagaggagaattttgtctgttgca |
128 |
Q |
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||||||| |||||||||||| |||||||||| || ||||||| ||| | ||||||| ||||||||||| |||||||||||||||| |||| || || | |
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| T |
22162751 |
taaaccttttttgattcctgcagtaccaaatgatgttgaagccataaacaactgcagttagaaccaccagcttgcaaagaggagaactttgcctattaga |
22162850 |
T |
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| Q |
129 |
tatatctagcgcctcggtaatagatgtgaaattgcagagagtatttatcttagagctgagccaatgccaaattttcttagccaaactgcattcaaaaaac |
228 |
Q |
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|||||||| ||||| ||||||||| ||| || || ||||||| || ||| || | |||||||| |||||||| | |||||| | |||| ||||| ||| |
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| T |
22162851 |
aatatctagagcctcattaatagatgagaagttacaaagagtatctaactttgaaccgagccaataccaaatttccctagccatattgcactcaaagaac |
22162950 |
T |
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| Q |
229 |
aaatgctgaaaagattcaccttgagcactatacagactgcacatggatggaaattga |
285 |
Q |
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||||| || || ||||| |||||| | || | ||||| |||||||| |||| |||| |
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| T |
22162951 |
aaatgatggaatgattccccttgaatattacaaagactacacatggagggaagttga |
22163007 |
T |
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