View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_180 (Length: 289)
Name: NF11982A_low_180
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_180 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 3701123 - 3701422
Alignment:
| Q |
1 |
aataatctttaaagaagatcaccattgtagttgctctaaaga-----------------gtccgtaaattcttcacctaaaatattctaacttaactctt |
83 |
Q |
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| T |
3701123 |
aataatctttaaagaagatcaccattgtagttgctctaaagactaaaatagaatctattgtccgtaaattcttcacctaaaatattctaacttaactctt |
3701222 |
T |
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| Q |
84 |
tgacataaactcgagcacttcaatgagatgttaaaagatatctttcaacttaatcaaagtatgtcctcgaatccaactcaaaaatgcaatattgttaaat |
183 |
Q |
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| T |
3701223 |
tgacataaactcgggcactacaatgagatgttaaaagatatctttcaacttaatcaaagtatgtcctcgaatccaactctaaaatgcaacattgttaaat |
3701322 |
T |
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| Q |
184 |
ctctgagagctatgtcataacaaaaactttgtattgaaaaatgacatgtcttctcggatatttttccaaatttccaatgcactctatccggaacaccaaa |
283 |
Q |
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| T |
3701323 |
ctctgacagctatgtcataacaaaaaccttcttttggaaaatgacatgtcttctcggagagtcttccaaatttccaatgcactctatccggaacaccaaa |
3701422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3715084 - 3715125
Alignment:
| Q |
1 |
aataatctttaaagaagatcaccattgtagttgctctaaaga |
42 |
Q |
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| T |
3715084 |
aataatctttaaagaagatcaccattgaagttgctctaaaga |
3715125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 3715143 - 3715184
Alignment:
| Q |
43 |
gtccgtaaattcttcacctaaaatattctaacttaactcttt |
84 |
Q |
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| T |
3715143 |
gtccgtaaattcttaacctaaaatattctaagttaactcttt |
3715184 |
T |
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