View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_189 (Length: 286)
Name: NF11982A_low_189
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_189 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 37035140 - 37035404
Alignment:
| Q |
6 |
ataaaatacccaaatagacttttatccaccaaggatcgtcgtctaagatnnnnnnnnnttgttcaatataataaaagttagtaatgtgtcttatgtctta |
105 |
Q |
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| T |
37035140 |
ataaaatacccaaatagacttttatccaccaaggatcgtcgtctaagataaaaaaaa-ttgttcaatataattaaagttagtaatgtgtcttatgtctta |
37035238 |
T |
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| Q |
106 |
ttccgtgttcttatgtccaatacttacatttttagataatcaaacgtattcatcctgttgaagtacatggattcgatacaagttaagaacacagtggctt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37035239 |
ttccgtgttcttatgtccaatacttacatttttagataatcaaacgtattcatcctgttgaagtacatggagtcgatacaagttaagaacacagtggctt |
37035338 |
T |
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| Q |
206 |
gggttaggtgatagatgtacaatcgtatggcttataggtcaattctatcatgtttctgaaagtcat |
271 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
37035339 |
gggttaggtgatagatgtacaatcgtatagcttataggtcaattctaacatgtttctgaaagtcat |
37035404 |
T |
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