View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_19 (Length: 444)
Name: NF11982A_low_19
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 4302284 - 4301853
Alignment:
| Q |
7 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtccatatggtgatatct |
106 |
Q |
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| T |
4302284 |
acaagtgcagttccatttaggatatgaattgaagccttatcaaccaagactactgcacctagaacttctctta--ggaatgtgtccatatggtgatatct |
4302187 |
T |
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| Q |
107 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4302186 |
gtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctggtgtttttcttgtcccacacaacctacctataatagtt |
4302087 |
T |
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| Q |
207 |
gcaaacgaactcacttgccgctgggtaatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302086 |
gcaaacgaactcacttgccgctgggtaatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaa |
4301987 |
T |
|
| Q |
307 |
aacgcatttcctttgtcttctgcattactgctgatgtgtccccccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaattcctc |
406 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301986 |
aacacatttcctttgtcttctgcattactgctgatgtgtccccccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaattcctc |
4301887 |
T |
|
| Q |
407 |
ttttctcaaatacaatcccaagtgcaacaccata |
440 |
Q |
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| T |
4301886 |
ttttctcaaatacaatcccaagtgcaataccata |
4301853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 49100456 - 49100586
Alignment:
| Q |
91 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
190 |
Q |
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| T |
49100456 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtataggcttgacaacagacgcttggaaaatgcaacctctggtgtttttcttgtcccgtgcag |
49100555 |
T |
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| Q |
191 |
cctacctataatagttgcaaacgaactcact |
221 |
Q |
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| T |
49100556 |
cctacctataaacgttgcaaacaaactcact |
49100586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 49112454 - 49112546
Alignment:
| Q |
263 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacgcatttcctttgtcttctgcattactgctgatgtgtccccccacta |
355 |
Q |
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| T |
49112454 |
ctaggaacatgttgaattctgcatattggttagaaggaactgaaaacacatttcctttgtcttctgcattactgctgatgtgcccccccacta |
49112546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 49100660 - 49100762
Alignment:
| Q |
263 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacgcatttcctttgtcttctgcattactgctgatgtgtccccccactatataaac |
362 |
Q |
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| T |
49100660 |
ctaggaacatgttgaattctgcatattggtttgaagggactgaaaaaacatttcctttgtcttctgtattcctgctgatgtgtcctcccactacataaac |
49100759 |
T |
|
| Q |
363 |
ctc |
365 |
Q |
| |
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||| |
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| T |
49100760 |
ctc |
49100762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 49112250 - 49112401
Alignment:
| Q |
91 |
ccatatggtgatatctgtcatgaatttgcttcaaatggtgtaggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaa |
190 |
Q |
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||||||||| |||||||| || ||||||||||| ||| |||||||||||| | || ||||| ||| ||| | |||||||||||||||||||| || |
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| T |
49112250 |
ccatatggtaatatctgttattggtttgcttcaaacggtttaggcttgacaatagactcttggtaaacacaacctctgatgtttttcttgtcccttctaa |
49112349 |
T |
|
| Q |
191 |
cctacctataatagttgcaaacgaactcacttgccgctgggtaatcaatgga |
242 |
Q |
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| T |
49112350 |
tctacctataatagttgcaaatgaactcacttggcgctgagtgctcaatgga |
49112401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 49100251 - 49100306
Alignment:
| Q |
35 |
ttgaagccttatcaaccaagactactgcacctagaacttctcttataggaatgtgtcc |
92 |
Q |
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| T |
49100251 |
ttgaagccttttcagccaagactactgcacctagaatttctc--ctaggaatgtgtcc |
49100306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 5085423 - 5085365
Alignment:
| Q |
362 |
cctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaataca |
420 |
Q |
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| T |
5085423 |
cctcatcagttacaaatttcaagggttgtgtttcatcaattcctcttttctcgaataca |
5085365 |
T |
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