View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_199 (Length: 280)
Name: NF11982A_low_199
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_199 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 40668038 - 40668309
Alignment:
| Q |
2 |
caaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacacaagaatatag |
101 |
Q |
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| T |
40668038 |
caaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacacaagaatatag |
40668137 |
T |
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| Q |
102 |
tgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttggtaagtgcct |
201 |
Q |
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| T |
40668138 |
tgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttggtaagtgcct |
40668237 |
T |
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| Q |
202 |
tatgttgttttatcttatcttcaagtctaac-aagtatactttaaaggcactctaaggtttttatattgttg |
272 |
Q |
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| T |
40668238 |
tatgttgttttatcttatcttcaagtctaacaaagtatactttaaaggcactctaagatttttattttgttg |
40668309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 4301683 - 4301817
Alignment:
| Q |
57 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
156 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4301683 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
4301782 |
T |
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| Q |
157 |
tatttgcaataagtctcttcattggcatttatttg |
191 |
Q |
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| T |
4301783 |
tatttgcgataagtctcttcattggtatttatttg |
4301817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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