View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_208 (Length: 277)
Name: NF11982A_low_208
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_208 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 42551090 - 42550848
Alignment:
| Q |
15 |
tccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551090 |
tccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatc |
42550991 |
T |
|
| Q |
115 |
atggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42550990 |
atggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgttt |
42550891 |
T |
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| Q |
215 |
ggctatcgaatctgcagtactggttggtagaaggttttatagt |
257 |
Q |
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| T |
42550890 |
ggctatcgaatctgcagtactggttggtagaaggttttatagt |
42550848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 42518995 - 42519182
Alignment:
| Q |
15 |
tccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatc |
114 |
Q |
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|||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| |||||| || || |||||||| ||||| ||||| | | |
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| T |
42518995 |
tccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagc |
42519094 |
T |
|
| Q |
115 |
atggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaaca |
202 |
Q |
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| T |
42519095 |
atggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaaca |
42519182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 1240774 - 1240992
Alignment:
| Q |
15 |
tccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatc |
114 |
Q |
| |
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|||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| ||||| ||||| |||||||| ||||| ||||| | | |
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| T |
1240774 |
tccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccagagagc |
1240873 |
T |
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| Q |
115 |
atggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgttt |
214 |
Q |
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||||| ||| | |||||||| || |||| | |||||||| ||||| || || |||||||| ||||||||||||||||| |||||||| |||| || | |
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| T |
1240874 |
atggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgttagtgtct |
1240973 |
T |
|
| Q |
215 |
ggctatcgaatctgcagta |
233 |
Q |
| |
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| || |||||| ||||||| |
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| T |
1240974 |
gactgtcgaatttgcagta |
1240992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 18235214 - 18235432
Alignment:
| Q |
22 |
ccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtga |
121 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
18235214 |
ccaagtaacatacgaccaacaatgagcatccaaacctcttgagcaaagccattcatggcagcaccagcaagaaaaagaacaccaccagaaagcatggtga |
18235313 |
T |
|
| Q |
122 |
gacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtttggctatc |
221 |
Q |
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||| ||||||| | |||||||| || |||||||| ||||| | ||||||||||| ||||||||||| || || ||||||||||||||||| || |
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| T |
18235314 |
tacgtcttccaagcactcgagttagccacgacgccccaagagatgcgataagagcagccacgtacaaagaggatgtgaataatgttaacgtttggctgtc |
18235413 |
T |
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| Q |
222 |
gaatctgcagtactggttg |
240 |
Q |
| |
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|||| |||||||||||||| |
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| T |
18235414 |
gaatttgcagtactggttg |
18235432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 41972407 - 41972595
Alignment:
| Q |
15 |
tccaaacccaagtaacatgcgaccaagaatgagcatccaaacctcttgagcaaaaccattcaaggcagcaccagcaagaaaaagcacacctccagaaatc |
114 |
Q |
| |
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|||||| ||||| |||||||| |||| | |||||||| || | || ||| || ||||||| ||||| ||||| |||||||| ||||| ||||| | | |
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| T |
41972407 |
tccaaaaccaagcaacatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccagagagc |
41972506 |
T |
|
| Q |
115 |
atggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaa |
203 |
Q |
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||||| ||||| |||||||| || |||||| |||||||| ||||| || | |||||||| ||||||||||||||||| |||||||| |
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| T |
41972507 |
atggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaa |
41972595 |
T |
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