View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_211 (Length: 275)
Name: NF11982A_low_211
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_211 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 50157354 - 50157610
Alignment:
| Q |
2 |
tgattagagcttagttgttttagcccaagtctcgtgagattacttgtaacacaagtcatctagccttgtgttttagttgagagaagacaaacattttttg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50157354 |
tgattagagcttagttgttttagcccaagtctcgtgagattacttgtaacacaagtcatctagccttgtgttttagttgagagaagacaaaccttttttg |
50157453 |
T |
|
| Q |
102 |
agtcaactgttcggtcagatttgaccataaaacatcatagga------aagagaaaactagagattagaagaggttggaaaatccctaatacattggaag |
195 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50157454 |
agccaactgttcggccaggtttgaccataaaacatcagaggagacaccaagagaaaactagagattagaagaggttggaaaatccctaatacattggaaa |
50157553 |
T |
|
| Q |
196 |
caagatgatgatgatgcatcaaggataaagttgagatacacaagaaacttgattttt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50157554 |
caagatgatgatgatgcatcaaggataaagttgagatacacaagaaacttgattttt |
50157610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 27220058 - 27220112
Alignment:
| Q |
15 |
gttgttttagcccaagtctcgtgagattacttgtaacacaagtcatctagccttg |
69 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
27220058 |
gttgttttagcctatgtctcttgagattacttgtaatgcaagtcatctagccttg |
27220112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 27214088 - 27214142
Alignment:
| Q |
15 |
gttgttttagcccaagtctcgtgagattacttgtaacacaagtcatctagccttg |
69 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
27214088 |
gttgttttagcctacgtctcatgagattacttgtaatgcaagtaatctagccttg |
27214142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University