View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_221 (Length: 272)
Name: NF11982A_low_221
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_221 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 24511831 - 24511574
Alignment:
| Q |
7 |
atttaatgggatacatcttagttgtagttttgtttttctagatgaccgatgggaactcttttacttcctataagt-tctagtcttttgcttattgttctt |
105 |
Q |
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| T |
24511831 |
atttagtgggatacatcttagttgtagttttgtttcccttgttgaccgataggaactctttcacttcctataagtatttagtcttttgcttattgttct- |
24511733 |
T |
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| Q |
106 |
gtggttagagtttaagccc-atttattcataattaaaaaaatattcattcataatt---nnnnnnnnncatagtgcagtacaataccacttt-----ttt |
196 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| |
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| T |
24511732 |
-tggttagagtttaagccctatttattcataattaaaaaaatatttattcataattaaaaaaaaaaaacatagtgcagtacaatacgactttttttgttt |
24511634 |
T |
|
| Q |
197 |
gtttgacttgtagtattgcagtacaatacgacttatttcctttattatagccaatgatgt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24511633 |
gtttgacttgtagtattgcagtacaatacgacttatttcctttattatagccaatgatgt |
24511574 |
T |
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