View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_230 (Length: 270)
Name: NF11982A_low_230
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_230 |
 | |
|
| [»] scaffold0245 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 1314545 - 1314692
Alignment:
| Q |
1 |
aacggtcttcaaagcagtgaagttagttacgttgctgataaagctgaatgaacgaaacggaaagcggttacagcgttggaaggcgaagttagttacattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1314545 |
aacggtcttcaaagcagtgaagttagttacgttgctgataaagctgaatgaacgaaacggaaagcggttacagcgttggagggcgaagttagttacattc |
1314644 |
T |
|
| Q |
101 |
acgtgtggcgagattaacggattgtggaatgatctgagttgaaactgc |
148 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1314645 |
acgtgcggcgagattaacggattgcggaatgatctgagttgaaactgc |
1314692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 1295902 - 1295995
Alignment:
| Q |
17 |
gtgaagttagttacgttgctgataaagctgaatgaacgaaacggaaagcggttacagcgttggaaggcgaagttagttacattcacgtgtggcg |
110 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
1295902 |
gtgaagttagttacattgttgataacactgaatgaacgaataggaaaacggttacggcggtggacggcgaagttagttacattcacgtgtggcg |
1295995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 1314751 - 1314808
Alignment:
| Q |
212 |
gaacctaatcctaaccatgaggttgcgaagagagggagaaggagtggtggtggtggtg |
269 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1314751 |
gaacctaaacctaaccatgaggttgcgaagagagggagaaggagtggtggtggtggtg |
1314808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 1296007 - 1296047
Alignment:
| Q |
107 |
ggcgagattaacggattgtggaatgatctgagttgaaactg |
147 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
1296007 |
ggcgagattaacggattgtgaaatgacctgagttgaaactg |
1296047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 23812 - 23905
Alignment:
| Q |
17 |
gtgaagttagttacgttgctgataaagctgaatgaacgaaacggaaagcggttacagcgttggaaggcgaagttagttacattcacgtgtggcg |
110 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||| ||||| ||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
23812 |
gtgaagttagttacattgttgataacactgaatgaacgaataggaaaacggttacggcggtggacggcgaagttagttacattcacgtgtggcg |
23905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 23917 - 23957
Alignment:
| Q |
107 |
ggcgagattaacggattgtggaatgatctgagttgaaactg |
147 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23917 |
ggcgagattaacggattgtgaaatgacctgagttgaaactg |
23957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University