View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_231 (Length: 270)
Name: NF11982A_low_231
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_231 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 42387389 - 42387598
Alignment:
| Q |
24 |
atttattgattaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagtactaaatgaaattcaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42387389 |
atttattgattaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaa |
42387488 |
T |
|
| Q |
124 |
agatgtagaatatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtctaaaaaactttaggcataaacaacataaaacattac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42387489 |
agatgtagaatatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtctaaaaaactttaggcataaacaacataaaacattac |
42387588 |
T |
|
| Q |
224 |
aaaggaaaag |
233 |
Q |
| |
|
|||||||||| |
|
|
| T |
42387589 |
aaaggaaaag |
42387598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 3190758 - 3190561
Alignment:
| Q |
33 |
ttaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagtactaaatgaaattcaaaagatgtaga |
132 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3190758 |
ttaatctgcagacctatcccaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga |
3190659 |
T |
|
| Q |
133 |
atatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtctaaaaaactttaggcataaacaacataaaacattacaaaggaaaa |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3190658 |
gtatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtctgaaaaactttaggcata---aacataaaacattacaaaggaaaa |
3190562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1752804 - 1752838
Alignment:
| Q |
1 |
gagagaatattctcttttgtaagatttattgatta |
35 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
1752804 |
gagagactattctcttttgtaagatttattgatta |
1752838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University