View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_233 (Length: 269)
Name: NF11982A_low_233
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_233 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 4123985 - 4124241
Alignment:
| Q |
1 |
attctcattgttggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcag |
100 |
Q |
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| T |
4123985 |
attctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcag |
4124084 |
T |
|
| Q |
101 |
caagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4124085 |
caagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaat |
4124184 |
T |
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| Q |
201 |
tgtgactattccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
257 |
Q |
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| T |
4124185 |
tgtgactattccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
4124241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 4153335 - 4153591
Alignment:
| Q |
1 |
attctcattgttggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcag |
100 |
Q |
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| T |
4153335 |
attctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcag |
4153434 |
T |
|
| Q |
101 |
caagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaat |
200 |
Q |
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| T |
4153435 |
caagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaat |
4153534 |
T |
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| Q |
201 |
tgtgactattccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
257 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153535 |
tgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
4153591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 4134541 - 4134783
Alignment:
| Q |
12 |
tggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
111 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||| |
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| T |
4134541 |
tggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagct |
4134640 |
T |
|
| Q |
112 |
gttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattc |
211 |
Q |
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||||||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4134641 |
gttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattc |
4134740 |
T |
|
| Q |
212 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
254 |
Q |
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| T |
4134741 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
4134783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 4145343 - 4145585
Alignment:
| Q |
12 |
tggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
111 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||| |
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| T |
4145343 |
tggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagct |
4145442 |
T |
|
| Q |
112 |
gttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattc |
211 |
Q |
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||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |
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| T |
4145443 |
gttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattc |
4145542 |
T |
|
| Q |
212 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
254 |
Q |
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| T |
4145543 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
4145585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 4163688 - 4163950
Alignment:
| Q |
1 |
attctcattgttggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcag |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||| |||||||||||||| ||||||| || |||| |||| || || | ||||||||||||| |||| |
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| T |
4163688 |
attctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaa |
4163787 |
T |
|
| Q |
101 |
caagttgagctgttgaatttgttgaa----ga--tgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatcttt |
194 |
Q |
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||||||||||||| |||||| ||||| || ||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| ||| |
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| T |
4163788 |
caagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccattttt |
4163887 |
T |
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| Q |
195 |
gtgaattgtgactattccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
257 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4163888 |
gtgaattgtgactattccatttgaatccttgagtggttgatctctgtttgcaatccatatatt |
4163950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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