View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_234 (Length: 269)
Name: NF11982A_low_234
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_234 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 29561468 - 29561221
Alignment:
| Q |
3 |
tcaaaggagaaaagtagtaatgttacagaaaacggaaaacacagtgaggttttaaggaatggagaaagnnnnnnncatgctgctagaggtggattactgg |
102 |
Q |
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| T |
29561468 |
tcaaaggaaaaaagtagcaatgttacagaaaacagaaaacacggtgaggttttaaggaatggagaaagaaaaacacatgctgctagaggtggactactag |
29561369 |
T |
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| Q |
103 |
ttccaaagcgaatgccgttccaagacattggaaacaactcgtcgttgttgatgaggcagcaaaatggcaaagcagttttccctttgcattgccatctttc |
202 |
Q |
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| T |
29561368 |
ttccaaaacgaatgccgttccaagacattgggaacaactcttcattgttgacgaggcagcagaatggcaaagcagttttccctttgcattgccatctttc |
29561269 |
T |
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| Q |
203 |
ttcaaatgctgagaaaactaatcgcttgaatgaatgctgatcagttct |
250 |
Q |
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| T |
29561268 |
ttcaaatgctgagaaaacttatcacttgaatgaacgctgattagttct |
29561221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 29557541 - 29557421
Alignment:
| Q |
128 |
cattggaaacaactcgtcgttgttgatgaggcagcaaaatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaactaatcgc |
227 |
Q |
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||||||||| |||||||| |||||||||| ||| || | |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| | | | |
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| T |
29557541 |
cattggaaataactcgtcattgttgatgaagca-cagagtggcaaagcagttttctctttgcattgccatatttcttcaaatgctgag-aaacttagcac |
29557444 |
T |
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| Q |
228 |
ttgaatgaatgctgatcagttct |
250 |
Q |
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| T |
29557443 |
ttgaatgaatgctgataagttct |
29557421 |
T |
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