View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_236 (Length: 269)
Name: NF11982A_low_236
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_236 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 65 - 269
Target Start/End: Original strand, 22291917 - 22292121
Alignment:
| Q |
65 |
gaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttgaggtcaaatacaacaacaaaatta |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22291917 |
gaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttgaagtcaaatacaacaacaaaatta |
22292016 |
T |
|
| Q |
165 |
gtggatccgattcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
22292017 |
gtggatccgattcaatcaactattaccctgttctcatcagagccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaaattaatgaatgcaa |
22292116 |
T |
|
| Q |
265 |
ttgaa |
269 |
Q |
| |
|
||||| |
|
|
| T |
22292117 |
ttgaa |
22292121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 22291877 - 22291918
Alignment:
| Q |
9 |
atataaacttggaaataatgaaagttgagaaataagagaaga |
50 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22291877 |
atataaacttggaaataatgaaaggtgagaaataagagaaga |
22291918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 53559297 - 53559393
Alignment:
| Q |
44 |
gagaagatgaaagtgaggggtgaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttg |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
53559297 |
gagaagatgaaagtgaggggtgaaactgagattgaaaccgaatggttttcattcatttggctttgatgtgaggggtcaggcttctggtgaattcttg |
53559393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 17682554 - 17682488
Alignment:
| Q |
180 |
tcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaattta |
246 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
17682554 |
tcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaattta |
17682488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 17682599 - 17682568
Alignment:
| Q |
43 |
agagaagatgaaagtgaggggtgaaactgaga |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17682599 |
agagaagatgaaagtgaggggtgaaactgaga |
17682568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 15434052 - 15434147
Alignment:
| Q |
174 |
attcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaattgaa |
269 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15434052 |
attcaatcaactattagcctgttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaaattaatgaatggaattgaa |
15434147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University