View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_24 (Length: 436)
Name: NF11982A_low_24
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 4 - 431
Target Start/End: Complemental strand, 40869761 - 40869334
Alignment:
| Q |
4 |
atgaatggtgggttgtaggatggagatggaatgatggttaatttctaaggatgtgaagaaacaaaaggatccagttggtgctgcagatagtccagattgg |
103 |
Q |
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| T |
40869761 |
atgaatggtgggttgtaggatggagatggaatgatggttaatttctaaggatgtgaagaaacaaaaggatccagttggtgctgcagatagtccagattgg |
40869662 |
T |
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| Q |
104 |
ttccccctaagttctggatctacttatgaaggataattggtccatttgaagaatgagttgctcagtgtctcgtataaataagcgtctaatctagcataaa |
203 |
Q |
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| T |
40869661 |
ttccccctaagttctggatctacttatgaaggataattggtccatttgaagaatgagttgctcagtgtctcgtataaataagtgtctaatctagcataaa |
40869562 |
T |
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| Q |
204 |
atcaatgagtgataattcattttatcaactctttttcacaggtgaaaattcttagaacacaatactgttggatcttacagagcataaatcagtttgagtt |
303 |
Q |
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| T |
40869561 |
atcaacgagtgataattcattttatcaactctttttcacaggtgaaaattcttagaacacaatactgttggatcttacagagcataaatcagtttgagtt |
40869462 |
T |
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| Q |
304 |
tcagggaaagcaaataactgctaataaggatcaagaaatccagttaatgcnnnnnnnnatgtacgatatcagattacagaccctatggcacattcttacc |
403 |
Q |
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| T |
40869461 |
tcagggaaagcaaataactgctaataaggatcaagaaatccagttaatgcttttctttatgtacgatatcagattacagaccctatggcacattcttacc |
40869362 |
T |
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| Q |
404 |
ttgataaaatgatattagatagctacat |
431 |
Q |
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| T |
40869361 |
ttgataaaatgatattagatagctacat |
40869334 |
T |
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