View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_246 (Length: 266)
Name: NF11982A_low_246
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_246 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 43023940 - 43024196
Alignment:
| Q |
4 |
atagtgtgaagagacaaatcccaatcaatactgctgtgccaagaaaacgatccatcagaggcgcaagttagtagagatcaacatcgcacttggtgggcac |
103 |
Q |
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| T |
43023940 |
atagtgtgaagagacaaatcccaatcaatactgctgtgccaagaaaacgatccatcagaggcgcaagttagtagagatcaacatcgcacttggtgggcac |
43024039 |
T |
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| Q |
104 |
aagctgagtggaggtattcttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatcta |
203 |
Q |
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| T |
43024040 |
aagctgagtgaaggtattcttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatcta |
43024139 |
T |
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| Q |
204 |
atttcgaagtagagtttcacatagatatcataaacttcaacactcttatctttgtta |
260 |
Q |
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| T |
43024140 |
atttcgaagtagagtttcacatagatatcataaacttcaacactcttatctttgtta |
43024196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 43049210 - 43049347
Alignment:
| Q |
123 |
ttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatctaatttcgaagtagagtttca |
222 |
Q |
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| T |
43049210 |
ttagaactcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctca |
43049309 |
T |
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| Q |
223 |
catagatatcataaacttcaacactcttatctttgtta |
260 |
Q |
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| T |
43049310 |
catagatatcataaacttcatcactcttgtctttgtta |
43049347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 43054831 - 43054880
Alignment:
| Q |
210 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgtt |
259 |
Q |
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| T |
43054831 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgtt |
43054880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 43062081 - 43062129
Alignment:
| Q |
209 |
gaagtagagtttcacatagatatcataaacttcaacactcttatctttg |
257 |
Q |
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| T |
43062081 |
gaagtagagcttcacatagataccataaactccaacactcttgtctttg |
43062129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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