View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_247 (Length: 266)
Name: NF11982A_low_247
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_247 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 37181530 - 37181785
Alignment:
| Q |
10 |
attatactacctccgatcatttttatgagagacaaattaattaactaaagttgatgtatttatagtataatctagactgagtaatttcataaaataaaag |
109 |
Q |
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| T |
37181530 |
attatactctctccgatcatttttatgagagacaaattaattaactaaagttgatgcatttatagtataatctaaacagagtaatttcataaaataaaa- |
37181628 |
T |
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| Q |
110 |
tgtggtggaagagaacaaattcaaatagtatgtacaatgcgttcagattatatatttcgaacaagaaaaacacactctaaattttaaaatccgaacgaaa |
209 |
Q |
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| T |
37181629 |
tgtggtggaagagaacggattcaaatagtatgtacaatgtgttcggattatatattccgaacaagaaaaacacactctaaattttaaaatccaaacgaaa |
37181728 |
T |
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| Q |
210 |
ctattttcgccaaaacaagggccgcacgagaagtatggtgaaaaagaatttcactga |
266 |
Q |
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| T |
37181729 |
atattttcgagaaaacaagggacgcacgagaagtatggtgaaaaagaatttcactga |
37181785 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 33012981 - 33012940
Alignment:
| Q |
29 |
tttttatgagagacaaattaattaactaaagttgatgtattt |
70 |
Q |
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| T |
33012981 |
tttttataagagacaaatggattaactaaagttgatgtattt |
33012940 |
T |
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