View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_249 (Length: 265)

Name: NF11982A_low_249
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_249
NF11982A_low_249
[»] chr7 (12 HSPs)
chr7 (51-242)||(31691181-31691360)
chr7 (109-141)||(22759064-22759096)
chr7 (109-141)||(27708934-27708966)
chr7 (104-139)||(25507241-25507276)
chr7 (146-185)||(42656459-42656498)
chr7 (111-141)||(28702639-28702669)
chr7 (152-185)||(2999141-2999174)
chr7 (146-183)||(28178913-28178950)
chr7 (131-185)||(12110292-12110343)
chr7 (113-141)||(31832193-31832221)
chr7 (153-185)||(39591554-39591586)
chr7 (113-141)||(39630264-39630292)
[»] chr2 (10 HSPs)
chr2 (143-184)||(33197327-33197368)
chr2 (105-141)||(6772695-6772731)
chr2 (146-185)||(17952788-17952827)
chr2 (146-185)||(31461382-31461421)
chr2 (146-185)||(32098395-32098434)
chr2 (138-185)||(40837515-40837562)
chr2 (105-139)||(6768583-6768617)
chr2 (111-140)||(10285758-10285787)
chr2 (153-185)||(29633023-29633055)
chr2 (153-185)||(33576681-33576713)
[»] chr8 (13 HSPs)
chr8 (105-141)||(31167861-31167897)
chr8 (109-185)||(12224986-12225059)
chr8 (111-185)||(26820112-26820182)
chr8 (146-185)||(14482146-14482185)
chr8 (146-185)||(31915356-31915395)
chr8 (146-185)||(39392748-39392787)
chr8 (153-187)||(29699205-29699239)
chr8 (110-139)||(12291784-12291813)
chr8 (105-142)||(35565183-35565220)
chr8 (153-185)||(8799356-8799388)
chr8 (153-185)||(11119086-11119118)
chr8 (153-185)||(40728505-40728537)
chr8 (147-187)||(44348432-44348472)
[»] chr1 (12 HSPs)
chr1 (105-141)||(6933117-6933153)
chr1 (152-185)||(39777613-39777646)
chr1 (110-185)||(14737792-14737872)
chr1 (109-141)||(32555703-32555735)
chr1 (110-141)||(48146173-48146204)
chr1 (143-185)||(46499941-46499983)
chr1 (146-184)||(50319236-50319274)
chr1 (109-142)||(4019748-4019781)
chr1 (153-185)||(15360845-15360877)
chr1 (153-185)||(36641826-36641858)
chr1 (109-141)||(41638453-41638485)
chr1 (153-185)||(49517021-49517053)
[»] chr5 (16 HSPs)
chr5 (152-185)||(10280663-10280696)
chr5 (109-141)||(30845201-30845233)
chr5 (146-185)||(7096214-7096253)
chr5 (110-141)||(14257346-14257377)
chr5 (146-185)||(37063161-37063200)
chr5 (152-185)||(10303751-10303784)
chr5 (152-185)||(14295456-14295489)
chr5 (152-185)||(28586853-28586886)
chr5 (108-141)||(35055091-35055124)
chr5 (108-141)||(35071833-35071866)
chr5 (152-185)||(35095870-35095903)
chr5 (112-141)||(36638644-36638673)
chr5 (153-221)||(912701-912768)
chr5 (153-185)||(29117017-29117049)
chr5 (152-184)||(29590828-29590860)
chr5 (153-185)||(35135749-35135781)
[»] chr3 (10 HSPs)
chr3 (108-141)||(4534499-4534532)
chr3 (110-185)||(20192693-20192765)
chr3 (145-185)||(49587003-49587043)
chr3 (146-185)||(1395615-1395654)
chr3 (110-141)||(20874458-20874489)
chr3 (146-184)||(905058-905096)
chr3 (112-141)||(8933670-8933699)
chr3 (153-185)||(26990685-26990717)
chr3 (109-141)||(53892009-53892041)
chr3 (153-185)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (146-185)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (146-185)||(2775-2814)
[»] chr4 (13 HSPs)
chr4 (146-181)||(30338683-30338718)
chr4 (146-185)||(51044546-51044585)
chr4 (107-141)||(7730508-7730542)
chr4 (154-184)||(9319283-9319313)
chr4 (147-185)||(10192229-10192267)
chr4 (152-185)||(4071832-4071865)
chr4 (152-185)||(20936089-20936122)
chr4 (108-141)||(24068801-24068834)
chr4 (103-140)||(34621813-34621850)
chr4 (112-141)||(41162211-41162240)
chr4 (131-181)||(6364081-6364128)
chr4 (153-185)||(19422369-19422401)
chr4 (110-138)||(52645572-52645600)
[»] scaffold0286 (1 HSPs)
scaffold0286 (101-139)||(16026-16064)
[»] chr6 (8 HSPs)
chr6 (101-139)||(2161051-2161089)
chr6 (101-135)||(33284129-33284163)
chr6 (143-184)||(281936-281977)
chr6 (112-141)||(2023787-2023816)
chr6 (152-185)||(30865432-30865465)
chr6 (105-137)||(2732376-2732408)
chr6 (153-185)||(5328925-5328957)
chr6 (153-185)||(24836286-24836318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (109-141)||(23806-23838)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 31691360 - 31691181
Alignment:
Q  51 ctgagaaagttaacaaaagaatgcctcaataataatgcatatacaatattagatgactctgtttggataaacaacttaattaagcacttatgatctataa 150  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691360 ctgaaaaagttaacaaaagaatgcctcaataataatgcatatacaatattagatgactctgtttggataaacaacttaattaagcacttatgatctataa 31691261  T
Q  151 cctatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataatccattctagaaagcttgtgg 242  Q
    ||||||||            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31691260 cctatttc------------tagaacaaagtcaaaattcgattccacatgagctataagttgtttttataatctattctagaaagcttgtgg 31691181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 22759064 - 22759096
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||    
T  22759064 ctgtttggataaacaacttaattaagcacttat 22759096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 27708966 - 27708934
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||    
T  27708966 ctgtttggataaacaacttaattaagcacttat 27708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 25507241 - 25507276
Alignment:
Q  104 tgactctgtttggataaacaacttaattaagcactt 139  Q
    |||| |||||||||||||||||||||||||||||||    
T  25507241 tgaccctgtttggataaacaacttaattaagcactt 25507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 42656459 - 42656498
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 28702639 - 28702669
Alignment:
Q  111 gtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||    
T  28702639 gtttggataaacaacttaattaagcacttat 28702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 2999141 - 2999174
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  2999141 ctatttctataacaaaagataaaataaagtcaaa 2999174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 28178913 - 28178950
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtca 183  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28178913 tataagctatttctataacaaaagataaaataaagtca 28178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 12110292 - 12110343
Alignment:
Q  131 taagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||   ||||||||||||||| ||| |||||| ||||||||||||    
T  12110292 taagcacttatga---ataacctatttctattacacaagataaaataaagtcaaa 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 31832193 - 31832221
Alignment:
Q  113 ttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||    
T  31832193 ttggataaacaacttaattaagcacttat 31832221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 39591586 - 39591554
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  39591586 tatttctataacaaaagataaaataaagtcaaa 39591554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 39630264 - 39630292
Alignment:
Q  113 ttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||    
T  39630264 ttggataaacaacttaattaagcacttat 39630292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 33197368 - 33197327
Alignment:
Q  143 atctataacctatttctataacaaaagatagaataaagtcaa 184  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33197368 atctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 6772731 - 6772695
Alignment:
Q  105 gactctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  6772731 gactctgtttggataaacaacttaattaagcacttat 6772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 17952827 - 17952788
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaa 17952788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 31461382 - 31461421
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  31461382 tataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 32098434 - 32098395
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32098434 tataagctatttctataacaaaagataaaataaagtcaaa 32098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 40837562 - 40837515
Alignment:
Q  138 ttatgatctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||| ||||| ||||||||||||||||||||| | ||||||||||    
T  40837562 ttatgatgtataagctatttctataacaaaagataaattaaagtcaaa 40837515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 6768617 - 6768583
Alignment:
Q  105 gactctgtttggataaacaacttaattaagcactt 139  Q
    ||||||||||||| |||||||||||||||||||||    
T  6768617 gactctgtttggacaaacaacttaattaagcactt 6768583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 10285758 - 10285787
Alignment:
Q  111 gtttggataaacaacttaattaagcactta 140  Q
    ||||||||||||||||||||||||||||||    
T  10285758 gtttggataaacaacttaattaagcactta 10285787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 29633023 - 29633055
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||| ||||||||||||||||    
T  29633023 tatttctataacaaaaaatagaataaagtcaaa 29633055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 33576713 - 33576681
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  33576713 tatttctataacaaaagatacaataaagtcaaa 33576681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 31167861 - 31167897
Alignment:
Q  105 gactctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  31167861 gactctgtttggataaacaacttaattaagcacttat 31167897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 12225059 - 12224986
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||||||||  ||||||   |||||  ||||||||  |||||||||| ||||||||||||    
T  12225059 ctgtttggataaacaacttaattaagagcttatg---tataagttatttctaagacaaaagataaaataaagtcaaa 12224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 26820112 - 26820182
Alignment:
Q  111 gtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||| |||||||| ||||     |||||  |||||||||||||||||||| ||||||||||||    
T  26820112 gtttggataaacaactcaattaagcgcttag----tataagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 14482146 - 14482185
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14482146 tataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 31915395 - 31915356
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  31915395 tataagctatatctataacaaaagatagaataaagtcaaa 31915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 39392787 - 39392748
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  39392787 tataaactatttctataacaaaagataaaataaagtcaaa 39392748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 29699205 - 29699239
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaaat 187  Q
    |||||||||||||||||||| ||||||||||||||    
T  29699205 tatttctataacaaaagataaaataaagtcaaaat 29699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 12291813 - 12291784
Alignment:
Q  110 tgtttggataaacaacttaattaagcactt 139  Q
    ||||||||||||||||||||||||||||||    
T  12291813 tgtttggataaacaacttaattaagcactt 12291784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 35565183 - 35565220
Alignment:
Q  105 gactctgtttggataaacaacttaattaagcacttatg 142  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  35565183 gactctgtttggataaacaacttcattaagtacttatg 35565220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 8799356 - 8799388
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  8799356 tatttctataacaaaagataaaataaagtcaaa 8799388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 11119118 - 11119086
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  11119118 tatttctataacaaaagataaaataaagtcaaa 11119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 40728537 - 40728505
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  40728537 tatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 44348432 - 44348472
Alignment:
Q  147 ataacctatttctataacaaaagatagaataaagtcaaaat 187  Q
    |||| ||||||||||||||||||||  ||||||||||||||    
T  44348432 ataagctatttctataacaaaagatgtaataaagtcaaaat 44348472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 6933153 - 6933117
Alignment:
Q  105 gactctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||||||    
T  6933153 gactctgtttggataaacaacttaattaagcacttat 6933117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 39777613 - 39777646
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||||||||||||||||    
T  39777613 ctatttctataacaaaagatagaataaagtcaaa 39777646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 14737872 - 14737792
Alignment:
Q  110 tgtttggataaacaacttaattaagcacttatgatctat-----aacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||| || ||||||||||||||||| || |||     ||  |||||||||||||||||||| ||||||||||||    
T  14737872 tgtttggataagcagcttaattaagcacttatcatatatgtgctaagttatttctataacaaaagataaaataaagtcaaa 14737792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 32555703 - 32555735
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||    
T  32555703 ctgtttggataaacaacttaattaagcacttat 32555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 48146204 - 48146173
Alignment:
Q  110 tgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||||    
T  48146204 tgtttggataaacaacttaattaagcacttat 48146173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 46499983 - 46499941
Alignment:
Q  143 atctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||| |||||||||||| |||||||| ||||||||||||    
T  46499983 atctataagctatttctataagaaaagataaaataaagtcaaa 46499941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 50319236 - 50319274
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaa 184  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  50319236 tataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 4019781 - 4019748
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttatg 142  Q
    ||||||||||||||||||||||| ||||||||||    
T  4019781 ctgtttggataaacaacttaatttagcacttatg 4019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 15360845 - 15360877
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  15360845 tatttctataacaaaagataaaataaagtcaaa 15360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 36641826 - 36641858
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  36641826 tatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 41638485 - 41638453
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||| |||||||||||||    
T  41638485 ctgtttggataaacaacttgattaagcacttat 41638453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 49517021 - 49517053
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  49517021 tatttctataacaaaagataaaataaagtcaaa 49517053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 10280696 - 10280663
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||||||||||||||||    
T  10280696 ctatttctataacaaaagatagaataaagtcaaa 10280663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 30845201 - 30845233
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    |||||||||||||||||||||||||||||||||    
T  30845201 ctgtttggataaacaacttaattaagcacttat 30845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 7096253 - 7096214
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  7096253 tataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 141
Target Start/End: Original strand, 14257346 - 14257377
Alignment:
Q  110 tgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttat 14257377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 37063200 - 37063161
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  37063200 tataaactatttctataacaaaagataaaataaagtcaaa 37063161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 10303751 - 10303784
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaa 10303784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 14295456 - 14295489
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  14295456 ctatttctataacaaaagataaaataaagtcaaa 14295489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 28586886 - 28586853
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  28586886 ctatttctataacaaaagataaaataaagtcaaa 28586853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 35055091 - 35055124
Alignment:
Q  108 tctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||| ||||||||||||||||||||||||    
T  35055091 tctgtttgggtaaacaacttaattaagcacttat 35055124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 35071833 - 35071866
Alignment:
Q  108 tctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||| ||||||||||||||||||||||||    
T  35071833 tctgtttgggtaaacaacttaattaagcacttat 35071866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 35095903 - 35095870
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaa 35095870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 36638644 - 36638673
Alignment:
Q  112 tttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||    
T  36638644 tttggataaacaacttaattaagcacttat 36638673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 912768 - 912701
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaaattcgattccacatgagctataagttgtttttataa 221  Q
    ||||||||||||| || ||| ||||||||||||||| | || || || ||| |||||||||||||||||    
T  912768 tatttctataacacaatataaaataaagtcaaaatt-gttttcatataagcaataagttgtttttataa 912701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 29117049 - 29117017
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  29117049 tatttctataacaaaagataaaataaagtcaaa 29117017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 29590860 - 29590828
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaa 184  Q
    ||||||||||||||||||||| |||||||||||    
T  29590860 ctatttctataacaaaagataaaataaagtcaa 29590828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 35135781 - 35135749
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  35135781 tatttctataacaaaagataaaataaagtcaaa 35135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 4534532 - 4534499
Alignment:
Q  108 tctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||||||    
T  4534532 tctgtttggataaacaacttaattaagcacttat 4534499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 20192765 - 20192693
Alignment:
Q  110 tgtttggataaacaacttaattaagcacttatgatctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||| || |||||||  ||||||   ||||| |||||| |||||||||||||| ||||||||||||    
T  20192765 tgtttggataaacagctcaattaagtgcttatg---tataagctatttatataacaaaagataaaataaagtcaaa 20192693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 49587043 - 49587003
Alignment:
Q  145 ctataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  49587043 ctataagctatttctataacaaaagataaaataaagtcaaa 49587003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 1395615 - 1395654
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaa 1395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 20874489 - 20874458
Alignment:
Q  110 tgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||||    
T  20874489 tgtttggataaacaacttaattaagcacttat 20874458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 905096 - 905058
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaa 184  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  905096 tataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 8933670 - 8933699
Alignment:
Q  112 tttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||    
T  8933670 tttggataaacaacttaattaagcacttat 8933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 26990685 - 26990717
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  26990685 tatttctataacaaaagataaaataaagtcaaa 26990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 53892041 - 53892009
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||| |||||||||||||||||    
T  53892041 ctgtttggataaacagcttaattaagcacttat 53892009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 54775079 - 54775111
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  54775079 tatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 1200 - 1161
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  1200 tataagctatttctataacaaaagataaaataaagtcaaa 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 2775 - 2814
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  2775 tataagctatttctataacaaaagataaaataaagtcaaa 2814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 30338718 - 30338683
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagt 181  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30338718 tataaactatttctataacaaaagatagaataaagt 30338683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 51044585 - 51044546
Alignment:
Q  146 tataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaa 51044546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 7730508 - 7730542
Alignment:
Q  107 ctctgtttggataaacaacttaattaagcacttat 141  Q
    |||| ||||||||||||||||||||||||||||||    
T  7730508 ctctatttggataaacaacttaattaagcacttat 7730542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 9319313 - 9319283
Alignment:
Q  154 atttctataacaaaagatagaataaagtcaa 184  Q
    |||||||||||||||||||||||||||||||    
T  9319313 atttctataacaaaagatagaataaagtcaa 9319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 10192229 - 10192267
Alignment:
Q  147 ataacctatttctataacaaaagatagaataaagtcaaa 185  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaa 10192267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 4071832 - 4071865
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  4071832 ctatttctataacaaaagataaaataaagtcaaa 4071865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 20936122 - 20936089
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  20936122 ctatttctataacaaaagataaaataaagtcaaa 20936089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 24068834 - 24068801
Alignment:
Q  108 tctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||| ||||||||||||||||||||    
T  24068834 tctgtttggataatcaacttaattaagcacttat 24068801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 34621813 - 34621850
Alignment:
Q  103 atgactctgtttggataaacaacttaattaagcactta 140  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  34621813 atgactctgtttggataaacaacttaactaaacactta 34621850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 41162240 - 41162211
Alignment:
Q  112 tttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||    
T  41162240 tttggataaacaacttaattaagcacttat 41162211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 6364081 - 6364128
Alignment:
Q  131 taagcacttatgatctataacctatttctataacaaaagatagaataaagt 181  Q
    ||||||||||||   ||||| ||||||||||||||||||||| ||||||||    
T  6364081 taagcacttatg---tataagctatttctataacaaaagataaaataaagt 6364128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 19422369 - 19422401
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  19422369 tatttctataacaaaagatataataaagtcaaa 19422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 52645572 - 52645600
Alignment:
Q  110 tgtttggataaacaacttaattaagcact 138  Q
    |||||||||||||||||||||||||||||    
T  52645572 tgtttggataaacaacttaattaagcact 52645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 16026 - 16064
Alignment:
Q  101 agatgactctgtttggataaacaacttaattaagcactt 139  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  16026 agatgactgtgtttggataaacaacttaattcagcactt 16064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 2161089 - 2161051
Alignment:
Q  101 agatgactctgtttggataaacaacttaattaagcactt 139  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  2161089 agatgactgtgtttggataaacaacttaattcagcactt 2161051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 33284129 - 33284163
Alignment:
Q  101 agatgactctgtttggataaacaacttaattaagc 135  Q
    |||||| ||||||||||||||||||||||||||||    
T  33284129 agatgattctgtttggataaacaacttaattaagc 33284163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 281977 - 281936
Alignment:
Q  143 atctataacctatttctataacaaaagatagaataaagtcaa 184  Q
    |||||||| ||||| ||||||||||||||| |||||||||||    
T  281977 atctataagctattcctataacaaaagataaaataaagtcaa 281936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 2023816 - 2023787
Alignment:
Q  112 tttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||||||||    
T  2023816 tttggataaacaacttaattaagcacttat 2023787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 30865432 - 30865465
Alignment:
Q  152 ctatttctataacaaaagatagaataaagtcaaa 185  Q
    ||||||||||||||||||||| ||||||||||||    
T  30865432 ctatttctataacaaaagataaaataaagtcaaa 30865465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 2732408 - 2732376
Alignment:
Q  105 gactctgtttggataaacaacttaattaagcac 137  Q
    ||||||||||| |||||||||||||||||||||    
T  2732408 gactctgtttgaataaacaacttaattaagcac 2732376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 5328925 - 5328957
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  5328925 tatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 24836318 - 24836286
Alignment:
Q  153 tatttctataacaaaagatagaataaagtcaaa 185  Q
    |||||||||||||||||||| ||||||||||||    
T  24836318 tatttctataacaaaagataaaataaagtcaaa 24836286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 23806 - 23838
Alignment:
Q  109 ctgtttggataaacaacttaattaagcacttat 141  Q
    ||||||||||||||||||||||||| |||||||    
T  23806 ctgtttggataaacaacttaattaaacacttat 23838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University