View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_250 (Length: 264)
Name: NF11982A_low_250
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_250 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41311266 - 41311027
Alignment:
| Q |
1 |
agttgggtcgtgcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311266 |
agttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
41311167 |
T |
|
| Q |
101 |
tcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311166 |
tcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggaga |
41311067 |
T |
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| Q |
201 |
tgcctacacttaagatatgggtgatgcaagaatacacaat |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
41311066 |
tgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 43164940 - 43164710
Alignment:
| Q |
5 |
gggtcgtgcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcag |
104 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| |||||| |
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| T |
43164940 |
gggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcag |
43164841 |
T |
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| Q |
105 |
agactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcc |
204 |
Q |
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| T |
43164840 |
agattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtc |
43164741 |
T |
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| Q |
205 |
tacacttaagatatgggtgatgcaagaatac |
235 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
43164740 |
tacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30165661 - 30165883
Alignment:
| Q |
1 |
agttgggtcgtgcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
30165661 |
agttgggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatg |
30165760 |
T |
|
| Q |
101 |
tcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggaga |
200 |
Q |
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|||||| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| |
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| T |
30165761 |
gcagagatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggaga |
30165848 |
T |
|
| Q |
201 |
tgcctacacttaagatatgggtgatgcaagaatac |
235 |
Q |
| |
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| T |
30165849 |
ggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
22 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
121 |
Q |
| |
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|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
122 |
ggtttttatagtgatt |
137 |
Q |
| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30125220 - 30124981
Alignment:
| Q |
1 |
agttgggtcgtgcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
100 |
Q |
| |
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|||||||| || ||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| || |
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| T |
30125220 |
agttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatg |
30125121 |
T |
|
| Q |
101 |
tcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggaga |
200 |
Q |
| |
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||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||| |
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| T |
30125120 |
tcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgaga |
30125021 |
T |
|
| Q |
201 |
tgcctacacttaagatatgggtgatgcaagaatacacaat |
240 |
Q |
| |
|
|| | || |||||||| |||||||||| |||||| |||| |
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| T |
30125020 |
tggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 30131162 - 30131068
Alignment:
| Q |
13 |
cttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
107 |
Q |
| |
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||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131162 |
cttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
1 |
agttgggtcgtgcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
100 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
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| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
101 |
tcagaga |
107 |
Q |
| |
|
||||||| |
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|
| T |
30120074 |
tcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
205 |
tacacttaagatatgggtgatgcaagaatacaca |
238 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
61 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
122 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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|
| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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