View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_251 (Length: 264)
Name: NF11982A_low_251
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_251 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 5251170 - 5251259
Alignment:
| Q |
7 |
tttggtgttgatgttggattttatatataaaatgtttctttgctgaaagcacaaaaaacaagtgttacagcataagaatagtggtttttg |
96 |
Q |
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| T |
5251170 |
tttggtgttgatgttggattttatatataaaatgtttctttgcagaaagcacaaaaaacaagtgttacaacataagaatagtggtttttg |
5251259 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 5251279 - 5251406
Alignment:
| Q |
121 |
ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacaggttcatccatgata |
220 |
Q |
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| T |
5251279 |
ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaa----------taatgcaaacaattttaacaaacaggttcatccatgata |
5251368 |
T |
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| Q |
221 |
attttaaaacaatcgnnnnnnntatacaaaggaatgaa |
258 |
Q |
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| T |
5251369 |
attttaaaacaatcgaaaaaaatatacaaaggaatgaa |
5251406 |
T |
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