View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_257 (Length: 263)
Name: NF11982A_low_257
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_257 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 340817 - 341074
Alignment:
| Q |
6 |
gtatggagttatcacaactgatccattgcatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
105 |
Q |
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| T |
340817 |
gtatggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaa |
340916 |
T |
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| Q |
106 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
205 |
Q |
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| T |
340917 |
ccttttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttc |
341016 |
T |
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| Q |
206 |
aagagaagataattcacaacaaagttgagaaatcattgattccaatattgaatcatgt |
263 |
Q |
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| T |
341017 |
aagagaagataattcacaacaaagttgagaaatcattgattccaatattgaatcatgt |
341074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 336789 - 337036
Alignment:
| Q |
16 |
atcacaactgatccattgcatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaaccttttggtt |
115 |
Q |
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| T |
336789 |
atcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttccaaccttttggtt |
336888 |
T |
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| Q |
116 |
taggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaagat |
215 |
Q |
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| T |
336889 |
taggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaat |
336988 |
T |
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| Q |
216 |
aattcacaacaaagttgagaaatcattgattccaatattgaatcatgt |
263 |
Q |
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| T |
336989 |
cattcacaacaaagttgagaaatcattgattcctttattgaatcatgt |
337036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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