View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_261 (Length: 261)
Name: NF11982A_low_261
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_261 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 48438868 - 48439114
Alignment:
| Q |
7 |
cctactgcaatggagcagatacagaagtttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctagagt |
106 |
Q |
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| T |
48438868 |
cctactgcaatggagcagatacagaagtttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctagagt |
48438967 |
T |
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| Q |
107 |
cgtcgaataaatcaaattaagaaaacacttgctagtaacttatacaaaactnnnnnnnnnncacaaaagtgtaccttttggaagtgaccaacattgttag |
206 |
Q |
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| T |
48438968 |
cgtcgaataaatcaaattaagaaaacacttgctagtaacttatacaaaactaaaaaaaaaacacaaaagtgtaccttttggaagtgaccaacattgttag |
48439067 |
T |
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| Q |
207 |
tgctatcaacaaggtgagcagcctttccaaagaaggtatgaacacca |
253 |
Q |
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| T |
48439068 |
tgctatcaacaaggtgagcagcctttccaaagaaggtatgaacacca |
48439114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 44530594 - 44530519
Alignment:
| Q |
178 |
taccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacacca |
253 |
Q |
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| T |
44530594 |
tacctgttggaagtgaccaacttggtttgtagtatctacaaggtgagcagctttaccgaaaaaggtatgaacacca |
44530519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 21982572 - 21982647
Alignment:
| Q |
178 |
taccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacacca |
253 |
Q |
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| T |
21982572 |
taccttttggaagtgaccaacattgttggtgctatcaacaaggtgtgcagccttcccaaagaaggtgtggacacca |
21982647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 21982262 - 21982307
Alignment:
| Q |
13 |
gcaatggagcagatacagaagtttccaattgatgtcaacacctaat |
58 |
Q |
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| T |
21982262 |
gcaattgagcagatacagaagttaccaatggatgtcaacacctaat |
21982307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 45199478 - 45199554
Alignment:
| Q |
177 |
gtaccttttggaagtgaccaacattgttagtgctatcaacaaggtgagcagcctttccaaagaaggtatgaacacca |
253 |
Q |
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| T |
45199478 |
gtaccttttggaaatgaccaacttggttagtgctgtcgaccaaatgagcagccttaccaaagaaggtgtgcacacca |
45199554 |
T |
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