View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_266 (Length: 258)
Name: NF11982A_low_266
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_266 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 17109500 - 17109751
Alignment:
| Q |
1 |
aaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaat |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17109500 |
aaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttatctttcaaaat |
17109599 |
T |
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| Q |
101 |
tagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109600 |
tagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgc |
17109699 |
T |
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| Q |
201 |
tagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaac |
252 |
Q |
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| T |
17109700 |
tagaggtttgccttcaagtataaaaagcctccttctcattaaatgttccaac |
17109751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 16978168 - 16978385
Alignment:
| Q |
1 |
aaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |||| |||| |
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| T |
16978168 |
aaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaat |
16978267 |
T |
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| Q |
101 |
tagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgc |
200 |
Q |
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| T |
16978268 |
tggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttggagtcgttctccga |
16978367 |
T |
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| Q |
201 |
tagaggtttgccttcaag |
218 |
Q |
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| T |
16978368 |
tggaggtttgccatcaag |
16978385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 17030040 - 17030257
Alignment:
| Q |
1 |
aaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |||| |||| |
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| T |
17030040 |
aaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaat |
17030139 |
T |
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| Q |
101 |
tagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgc |
200 |
Q |
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| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||||||| |
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| T |
17030140 |
tggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgttctccga |
17030239 |
T |
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| Q |
201 |
tagaggtttgccttcaag |
218 |
Q |
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| T |
17030240 |
tggaggtttgccatcaag |
17030257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 17048378 - 17048595
Alignment:
| Q |
1 |
aaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaat |
100 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |||| |||| |
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| T |
17048378 |
aaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaat |
17048477 |
T |
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| Q |
101 |
tagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtccttctccgc |
200 |
Q |
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| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| ||| ||||||| |
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| T |
17048478 |
tggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgttctccga |
17048577 |
T |
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| Q |
201 |
tagaggtttgccttcaag |
218 |
Q |
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| T |
17048578 |
tggaggtttgccatcaag |
17048595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
109 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
152 |
Q |
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| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
109 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
152 |
Q |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
109 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
152 |
Q |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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