View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_27 (Length: 428)
Name: NF11982A_low_27
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 6757749 - 6758173
Alignment:
| Q |
1 |
gaacaaatattgtctgagtgatttaaatcttgnnnnnnnncttccataaatnnnnnnntagttgcatttataatttaaatgtccctagagctatgcaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6757749 |
gaacaaatattgtctgagtgatttaaatcttgttttttttcttccataaataaaaaaatagttgcatttataatttaaatgtccctagagctatgcaagt |
6757848 |
T |
|
| Q |
101 |
ataatgcggtagattgtcttaggatttggacacatactttagttgttgccttttaaaatatgtctgatcatagttctttggaacactaatatttgctctg |
200 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6757849 |
ataatgcagtaaattgtcttaggatttggacacatactttagttgttgccttttaaaatatgtctgatcatagttctttggaacactaatatttgctctg |
6757948 |
T |
|
| Q |
201 |
aactgctaatatcaggaagctatttt-tgtaatgccatgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagagaaagg |
299 |
Q |
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|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |
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| T |
6757949 |
aactgctaatatcaggaagctattttttgtaatgtcatgatttcttatgtttactaatttggtttgtactgccttccatgctgtaggtggaagagaaggg |
6758048 |
T |
|
| Q |
300 |
attaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtgctttc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6758049 |
attaacttccgagacagcggacagaattggaacttttactaatgaaaaaggacactctttaacattattacgtagacttaaacaagaaggcagtgctttc |
6758148 |
T |
|
| Q |
400 |
ttagaaaatgctggatctgttgatg |
424 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
6758149 |
ttagaaaatgctggatctgttgatg |
6758173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 237 - 424
Target Start/End: Complemental strand, 25465068 - 25464881
Alignment:
| Q |
237 |
tgatttcttatgtttactaatttggtttgcactgccttccgtgctgtaggtggaagagaaaggattaacttccgagacagcggacagaattggaactttt |
336 |
Q |
| |
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||||||||||| |||| |||| |||||| |||| ||| | ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
25465068 |
tgatttcttatctttaataatgtggtttttactgactttcatgctgtaggtggaagagaaaggattaactgctgagacagctgacagaattggaactttt |
25464969 |
T |
|
| Q |
337 |
attaatgaaaaaggacaccctttaacattattacgtagacttaaacaagaaggcagtgctttcttagaaaatgctggatctgttgatg |
424 |
Q |
| |
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|||| || |||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25464968 |
gttaaagagaaaggacatcctttaacattgttatcgaaacttaaacaagaaggcagtgctttcttagaaaatgctggatctgttgatg |
25464881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 278 - 424
Target Start/End: Complemental strand, 25475761 - 25475614
Alignment:
| Q |
278 |
tgctgtaggtggaagagaaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagact |
377 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| || |||||||| |||||||| || ||| | || |
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| T |
25475761 |
tgctgtaggtggaagagaaaggattaactgttgagacagctgacagaattggaacttttgttagagagaaaggacatcctttaacgttgttagagaagct |
25475662 |
T |
|
| Q |
378 |
taaacaagaaggcagtgctttcttag-aaaatgctggatctgttgatg |
424 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25475661 |
taaacaagaaggcagtgctttcttagaaaaatgctggatctgttgatg |
25475614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 281 - 424
Target Start/End: Complemental strand, 40087435 - 40087292
Alignment:
| Q |
281 |
tgtaggtggaagagaaaggattaacttccgagacagcggacagaattggaacttttattaatgaaaaaggacaccctttaacattattacgtagacttaa |
380 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||| ||||| | ||| || |
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| T |
40087435 |
tgtaggtggaagagaaaggattaagtgccgagacagctgacagaatcggaacttttgttaaagaaaaaggacaccctttaacagtattatcaaaactgaa |
40087336 |
T |
|
| Q |
381 |
acaagaaggcagtgctttcttagaaaatgctggatctgttgatg |
424 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
40087335 |
acaagatagcagtcctttcttagaaaatgctggatctgttgatg |
40087292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 28948860 - 28948826
Alignment:
| Q |
217 |
aagctatttttgtaatgccatgatttcttatgttt |
251 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
28948860 |
aagctatatttgtaatgccatgatttcttatgttt |
28948826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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