View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_275 (Length: 255)

Name: NF11982A_low_275
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_275
NF11982A_low_275
[»] chr3 (2 HSPs)
chr3 (80-249)||(50222720-50222889)
chr3 (13-80)||(50222573-50222640)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 80 - 249
Target Start/End: Original strand, 50222720 - 50222889
Alignment:
Q  80 aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50222720 aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt 50222819  T
Q  180 ccgttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt 249  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50222820 cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatctt 50222889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 50222573 - 50222640
Alignment:
Q  13 tagagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50222573 tagagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga 50222640  T

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