View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_276 (Length: 254)

Name: NF11982A_low_276
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_276
NF11982A_low_276
[»] chr2 (5 HSPs)
chr2 (20-254)||(12843354-12843588)
chr2 (90-226)||(12861921-12862057)
chr2 (91-165)||(13125763-13125837)
chr2 (147-187)||(13125589-13125629)
chr2 (20-67)||(13125540-13125587)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 12843354 - 12843588
Alignment:
Q  20 ataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaaaatgagttaaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12843354 ataagtgcaatactcaacaagactaatatcaaacactatatgattctatttctacctctataggtgaaattaacactataatctctaaaatgagttaaga 12843453  T
Q  120 acataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatcttaacggaccctcc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  12843454 acataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaatttacaatgtaaaatcaatcttaacggtacctcc 12843553  T
Q  220 aagcttgaacgcgacttccgatactaaaagcacaa 254  Q
    |||||||||||||| ||||||||||||||||||||    
T  12843554 aagcttgaacgcgaattccgatactaaaagcacaa 12843588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 12862057 - 12861921
Alignment:
Q  90 taacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta 189  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12862057 taacactataatctctaaaatgagttacgaacataagagtgattaatcgatcttaacagtagacattaacactataatcttgaatcttgattgaaattta 12861958  T
Q  190 caatgtaaaatcaatcttaacggaccctccaagcttg 226  Q
     || |||||||| ||||||| ||  ||||||||||||    
T  12861957 gaaagtaaaatcgatcttaagggtacctccaagcttg 12861921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 13125763 - 13125837
Alignment:
Q  91 aacactataatctctaaaatgagttaagaacataagaatgattaatcgatcttaacagtagacattaacactata 165  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  13125763 aacactataatctctaaaatgagttaggaacataagagtgattaatcgatcttaacagtacacattaacactata 13125837  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 13125589 - 13125629
Alignment:
Q  147 agtagacattaacactataatcttgaatcttgattgaaatt 187  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  13125589 agtagacattaacactatgatcttgaatcttgatagaaatt 13125629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 13125540 - 13125587
Alignment:
Q  20 ataagtgcaatactcaacaagactaatatcaaacactatatgattcta 67  Q
    |||||||||||||||||||| ||||| |||||||||| ||| ||||||    
T  13125540 ataagtgcaatactcaacaacactaaaatcaaacactgtattattcta 13125587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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