View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_279 (Length: 254)

Name: NF11982A_low_279
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_279
NF11982A_low_279
[»] chr5 (2 HSPs)
chr5 (7-174)||(41222154-41222322)
chr5 (172-247)||(41222675-41222752)
[»] chr8 (1 HSPs)
chr8 (28-154)||(13375863-13375997)
[»] chr3 (3 HSPs)
chr3 (28-85)||(38943007-38943064)
chr3 (28-70)||(7055522-7055564)
chr3 (28-89)||(38941597-38941658)
[»] chr6 (3 HSPs)
chr6 (28-89)||(16985298-16985359)
chr6 (102-139)||(16795006-16795043)
chr6 (28-88)||(16779031-16779091)
[»] scaffold0133 (1 HSPs)
scaffold0133 (28-68)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 41222154 - 41222322
Alignment:
Q  7 ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagat-aggtcgctagcttt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||    
T  41222154 ataactgctgatgcccgccgctgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttcgaaagataaggtcgctagattt 41222253  T
Q  106 cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgtcgaagtagtgatcccagcaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41222254 cagcaactccgaaacatgcaaaagttaagtattgttaatttctctatgttgaagtagtgatcccagcaa 41222322  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 41222675 - 41222752
Alignment:
Q  172 caattaatgtaatgtaaatttattgtgacacg--atatatatcttaaatatatggtcactttataaaaatattcttgg 247  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||||||||| ||||    
T  41222675 caattaatgtaatgtaaatttattgtaacacgatatatatatcttaaatatatggtcacttcataaaaatatttttgg 41222752  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 13375997 - 13375863
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaagata-ggtcgcta-------gctttcagcaactccgaaa 119  Q
    |||| ||||||| ||||||||||||| ||||||||  |||| | ||||||| |||||| ||| || |||| |||       |||||||||||||||||||    
T  13375997 tgccagactggttgggtgccatgactactcttcaaagattaaaaatcagtgggtttccgaagttaaggtcactaccagacagctttcagcaactccgaaa 13375898  T
Q  120 catgcaaaagttaagtattgttaatttctctatgt 154  Q
    | |||||| |||||||||||||| || ||||||||    
T  13375897 cttgcaaaggttaagtattgttagttgctctatgt 13375863  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 38943064 - 38943007
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttcc 85  Q
    |||||||||||| ||||||||||||||||||||||  |||||| ||||||| ||||||    
T  38943064 tgccggactggttgggtgccatgacttctcttcaaagattacaaatcagtgggtttcc 38943007  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 7055522 - 7055564
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattaca 70  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  7055522 tgccggactggttgggtgccatgacttctcttcaagtattaca 7055564  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 38941597 - 38941658
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaag 89  Q
    |||| ||||||| ||||||||||||||||||||||| |||||| |||  | |||||||||||    
T  38941597 tgccagactggttgggtgccatgacttctcttcaagtattacacatccttaagtttccaaag 38941658  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 16985359 - 16985298
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaag 89  Q
    |||| ||||| | |||||||||||||||||||||||||||| | |||| ||| |||||||||    
T  16985359 tgccagactgtttgggtgccatgacttctcttcaagaattatacatcattgactttccaaag 16985298  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 16795043 - 16795006
Alignment:
Q  102 ctttcagcaactccgaaacatgcaaaagttaagtattg 139  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  16795043 ctttcagcaactccgaaacttgcaagagttaagtattg 16795006  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 16779091 - 16779031
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaattacatatcagtgagtttccaaa 88  Q
    |||| ||||| | ||||||||||||||||||||||| |||| | |||  ||||||||||||    
T  16779091 tgccagactgtttgggtgccatgacttctcttcaagtattagacatctatgagtttccaaa 16779031  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 6415 - 6375
Alignment:
Q  28 tgccggactggtagggtgccatgacttctcttcaagaatta 68  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  6415 tgccggactggttgggtgccatgacttctcttcaagtatta 6375  T

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