View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_285 (Length: 252)
Name: NF11982A_low_285
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_285 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3271963 - 3271724
Alignment:
| Q |
1 |
attagattttttgtctcacagctcagcatagcgttttgtggttgtttttaacatttgttccatgcattcaccgtttgtccaaatgttagaacatctgctt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3271963 |
attagattctttgtctcacagctcagcatagcgttttgtgtttgtttttaacatttgttccatgtattcaccgtttgtccaaatgttagaacatctgctt |
3271864 |
T |
|
| Q |
101 |
aaattcaatgtcttaaacaattgtctctatgtgatggaagagtatatattgatcattcacagaggtccagattggatttcaataccattacaaattgaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3271863 |
aaattcaatgtcttaaacaattgtctctatgtgatggaagagtatatattgatcattcacagagctccagattggatttcaataccattacaaattgaat |
3271764 |
T |
|
| Q |
201 |
atgataccataaatgatagtaataaactattcatatcagt |
240 |
Q |
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| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
3271763 |
aggataccataaatgatagtaatgaactattcatgtcagt |
3271724 |
T |
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