View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_287 (Length: 252)
Name: NF11982A_low_287
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_287 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 23407561 - 23407312
Alignment:
| Q |
1 |
acaacatttatattaagctcttcaattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
23407561 |
acaacatttatattaagctcttcaattaaaaagtgacttttttataaagaagaaaaataagaaaatatgacttttgaaataaggtgatgagacttacttc |
23407462 |
T |
|
| Q |
101 |
taccaggcacgcacaacgtgttttccctgctccacctttcgaatcccaatgagcatgaattttatgtttcgtttattttgagagcaatttttccgttaaa |
200 |
Q |
| |
|
||||||| ||||||||| | |||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
23407461 |
taccaggtacgcacaacttattttccctgccccacccttagaattccaatgagcatgaattttatgtttcgtttattttgagagcaatttttctgttaaa |
23407362 |
T |
|
| Q |
201 |
gtggttttgttgacgtcatgagttcttaaactcaattttgtttaccaagt |
250 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23407361 |
gtggttttgttgacgtcatgtgttcttaaactcaattttgtttaccaagt |
23407312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 9871283 - 9871030
Alignment:
| Q |
3 |
aacatttatattaagctcttcaattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttatttcta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
9871283 |
aacatttatattaagctcttcaattaaaaagtgacttttttataaagaagaaaaataagaaaatatgacttttgaaataaggtgatgagacttacttcta |
9871184 |
T |
|
| Q |
103 |
ccaggcacgcacaacgtgttttccctgctccacctttcgaatcccaatgagcatgaattttatgtttc------gtttattttgagagcaatttttccgt |
196 |
Q |
| |
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||||||||| |||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
9871183 |
ccaggcacgtgcaacttattttcccagctccacccttcgaatcccaatgagcatgaattttatgtttctaacatttttattttgagagcaatttttctgt |
9871084 |
T |
|
| Q |
197 |
taaagtggttttgttgacgtcatgagttcttaaactcaattttgtttaccaagt |
250 |
Q |
| |
|
|||| | ||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9871083 |
taaatttgttttgttgacgtcatgtgctcttaaactcaattttgtttaccaagt |
9871030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33076033 - 33075921
Alignment:
| Q |
1 |
acaacatttatattaagctctt-caattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttattt |
99 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| ||| || |
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|
| T |
33076033 |
acaacatttatattaagctttttcagttaaaaagtgacttttttataaagaagaaaaataagaaaataggacttttaaaataaggtgatgagagttactt |
33075934 |
T |
|
| Q |
100 |
ctaccaggcacgc |
112 |
Q |
| |
|
||||||||||||| |
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|
| T |
33075933 |
ctaccaggcacgc |
33075921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 33075821 - 33075766
Alignment:
| Q |
193 |
ccgttaaagtggttttgttgacgtcatgagttcttaaactcaattttgtttaccaa |
248 |
Q |
| |
|
|||||||| ||||||||||||||||||| | || |||||||||||||||||||||| |
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|
| T |
33075821 |
ccgttaaattggttttgttgacgtcatgtgctcataaactcaattttgtttaccaa |
33075766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 37499408 - 37499654
Alignment:
| Q |
1 |
acaacatttatattaagctcttcaattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
37499408 |
acaacatttatattaagctcttcaattaaaaagtgacttttttataaagaagaaaa---------tatgacttttgaaataaggtgatgagacttacttc |
37499498 |
T |
|
| Q |
101 |
taccaggcacgcacaacgtgttttccctgctccacctttcgaatcccaatgagcatgaattttatgtttc------gtttattttgagagcaatttttcc |
194 |
Q |
| |
|
|||||||||||| |||| | ||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37499499 |
taccaggcacgcgcaacttattttcccagctccacccttcgaatcccaatgaacatgaattttatgtttctaacatttttattttgagagcaatttttct |
37499598 |
T |
|
| Q |
195 |
gttaaagtggttttgttgacgtcatgagttcttaaactcaattttgtttaccaagt |
250 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37499599 |
gttaaattggttttgttgacgtcatgtgttcttaaactcaattttgtttaccaagt |
37499654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 836106 - 835861
Alignment:
| Q |
1 |
acaacatttatattaagctcttcaattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttatttc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
836106 |
acaacatttatattaagctcttgaattaaaaagtgacttttttataaagaagaaaaataagaaaatatgacttttgaaataaggtgatgagacttacttc |
836007 |
T |
|
| Q |
101 |
taccaggcacgcacaacgtgttttccctgctccacctttcgaatcccaatgagcatgaattttatgtttc------gtttattttgagagcaatttttcc |
194 |
Q |
| |
|
| || ||| | ||||| | |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
836006 |
t---------gcgcaatttattttcgcagctccacccttcgaatctcaatgagcatgaattttatgtttctaaaatttttattttgagagcaatttttct |
835916 |
T |
|
| Q |
195 |
gttaaagtggttttgttgacgtcatgagttcttaaactcaattttgtttaccaag |
249 |
Q |
| |
|
|||||| ||||||| |||||| || | | |||||||||||||||||||||||||| |
|
|
| T |
835915 |
gttaaattggttttattgacgccaagtgctcttaaactcaattttgtttaccaag |
835861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1201286 - 1201041
Alignment:
| Q |
1 |
acaacatttatattaagctcttcaattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttatttc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1201286 |
acaacatttatattaagctcttgaattaaaaagtgacttttttataaagaagaaaaataagaaaatatgacttttgaaataaggtgatgagacttacttc |
1201187 |
T |
|
| Q |
101 |
taccaggcacgcacaacgtgttttccctgctccacctttcgaatcccaatgagcatgaattttatgtttc------gtttattttgagagcaatttttcc |
194 |
Q |
| |
|
| || ||| | ||||| | |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1201186 |
t---------gcgcaatttattttcgcagctccacccttcgaatctcaatgagcatgaattttatgtttctaaaatttttattttgagagcaatttttct |
1201096 |
T |
|
| Q |
195 |
gttaaagtggttttgttgacgtcatgagttcttaaactcaattttgtttaccaag |
249 |
Q |
| |
|
|||||| ||||||| |||||| || | | |||||||||||||||||||||||||| |
|
|
| T |
1201095 |
gttaaattggttttattgacgccaagtgctcttaaactcaattttgtttaccaag |
1201041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34052515 - 34052549
Alignment:
| Q |
1 |
acaacatttatattaagctcttcaattaaaaagtg |
35 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34052515 |
acaacatttatattaaggtcttcaattaaaaagtg |
34052549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 16982051 - 16981900
Alignment:
| Q |
1 |
acaacatttatattaagctcttcaattaaaaagtgannnnnnnataaagaagaaaaataagtaaatatgacttttgaaataaggtgatgagacttatttc |
100 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||| |||||||||||| ||| |
|
|
| T |
16982051 |
acaacatttatattaagttcctcaattaaaaagtgacttttttataaagaagaaaaataagaaaataggactttt-aaataagttgatgagacttacttc |
16981953 |
T |
|
| Q |
101 |
taccaggcacgcacaacgtgttttccctgctccacctttcgaatcccaatgag |
153 |
Q |
| |
|
|||| ||||||| || | |||||||||||||||| |||||||||||||||| |
|
|
| T |
16981952 |
tacctggcacgcgtgacttattttccctgctccacccttcgaatcccaatgag |
16981900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 16981824 - 16981771
Alignment:
| Q |
193 |
ccgttaaagtggttttgttgacgtcatgagttcttaaactcaattttgtttacc |
246 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16981824 |
ccgttaaattggttttgttgacgtcatgttctcttaaactcaattttgtttacc |
16981771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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