View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_292 (Length: 251)
Name: NF11982A_low_292
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_292 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48066587 - 48066831
Alignment:
| Q |
1 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48066587 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaattaattgtccactatatct |
48066686 |
T |
|
| Q |
101 |
tgaaacaacagatttcattcttcttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaa |
200 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48066687 |
tgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgtcccacaaa |
48066786 |
T |
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| Q |
201 |
atggcatgacctctgacagaaatgccattttctttggcaaatttc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48066787 |
atggcatgacctctgacagaaatgccattttctttggcaaatttc |
48066831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 48099543 - 48099776
Alignment:
| Q |
12 |
gaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacag |
111 |
Q |
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|||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||| |
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| T |
48099543 |
gaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacag |
48099642 |
T |
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| Q |
112 |
atttcattcttcttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacc |
211 |
Q |
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|| | |||||| |||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| ||| |||| || |||||| |
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| T |
48099643 |
atcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacc |
48099742 |
T |
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| Q |
212 |
tctgacagaaatgccattttctttggcaaatttc |
245 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
48099743 |
tctgacagaaatgccattttctttggcgaatttc |
48099776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 48062500 - 48062742
Alignment:
| Q |
3 |
tatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttg |
102 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||| || ||||||||||| || || ||||||||||||||||||||||| |||| |||| |
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| T |
48062500 |
tatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttg |
48062599 |
T |
|
| Q |
103 |
aaacaacagatttcattcttcttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaat |
202 |
Q |
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| || || |||||||||||| ||||||| |||||||||||||| |||||||| |||||| |||||| || ||| ||||||| || ||||||||| |
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| T |
48062600 |
agaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaat |
48062699 |
T |
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| Q |
203 |
ggcatgacctctgacagaaatgccattttctttggcaaatttc |
245 |
Q |
| |
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| ||||||||||||||| ||||||||||| || ||||||||| |
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| T |
48062700 |
gttatgacctctgacagatatgccattttccttagcaaatttc |
48062742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 48106142 - 48106375
Alignment:
| Q |
10 |
cagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaac |
109 |
Q |
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|||| |||||||| || |||||||||||| ||||| | ||||||||| || ||||| || |||||||||||||||| ||| |||| ||| |||||| |
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| T |
48106142 |
cagatgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaac |
48106241 |
T |
|
| Q |
110 |
agatttcattcttcttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatga |
209 |
Q |
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||||| |||||| || || |||| || ||||| || || |||| |||| ||||||| || ||| || ||||||||| ||| |||||| |||| |
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| T |
48106242 |
agattcgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatga |
48106341 |
T |
|
| Q |
210 |
cctctgacagaaatgccattttctttggcaaatt |
243 |
Q |
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|||||||||||||| ||||| ||||| ||||||| |
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| T |
48106342 |
cctctgacagaaattccattatctttagcaaatt |
48106375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1005 - 849
Alignment:
| Q |
1 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1005 |
aatatactgcagaggcattttctccgagtttgtcctaaaaaaatcggttgtggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct |
906 |
T |
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| Q |
101 |
tgaaacaacagatttcattcttcttgcagccgcttctcgtaattcttcaggagatag |
157 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
905 |
tgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag |
849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 50231227 - 50231389
Alignment:
| Q |
1 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct |
100 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50231227 |
aatatactgcagaggcatttttgccgagtttgtcctcaaaaaaccggttgtggacattctcgtttacaacgtcccatgcaatcaattgtccactatatct |
50231326 |
T |
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| Q |
101 |
tgaaacaacagatttcattcttcttgcagccgcttctcgtaattcttcaggagatagggactt |
163 |
Q |
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| T |
50231327 |
tgaaaccaaaaatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt |
50231389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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