View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_297 (Length: 250)
Name: NF11982A_low_297
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_297 |
 | |
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| [»] chr6 (20 HSPs) |
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| [»] chr1 (6 HSPs) |
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|
| [»] chr4 (12 HSPs) |
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| [»] scaffold0807 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 6589108 - 6589350
Alignment:
| Q |
8 |
ttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6589108 |
ttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttaga |
6589207 |
T |
|
| Q |
108 |
ggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6589208 |
ggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaag |
6589307 |
T |
|
| Q |
208 |
aaagtgaagctacttggaatgaactttgtagttcccatgctgg |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6589308 |
aaagtgaagctacttggaatgaactttgtagttcccatgctgg |
6589350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 6416286 - 6416044
Alignment:
| Q |
2 |
tcgagtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaa |
101 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||| |||| | ||||||||||||| |||||| |||||||| |
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|
| T |
6416286 |
tcgagtttggtgtataccctcaattaaagtctctctatttgggaaaaaataaatggttaagcgatgaaggtatcataatgttttcttccaacttccccaa |
6416187 |
T |
|
| Q |
102 |
tttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttc |
201 |
Q |
| |
|
||| || |||||||||| ||| ||||||| | ||||| |||||||||||||||| || | | ||||||||||||| ||||||||||||||||||| |
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|
| T |
6416186 |
tttgcagctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttt |
6416087 |
T |
|
| Q |
202 |
tgtaagaaagtgaagctacttggaatgaactttgtagttccca |
244 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
6416086 |
tgtaaaaaagtgaagctacatggaatggactttgtagttccca |
6416044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 7119462 - 7119238
Alignment:
| Q |
17 |
atcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttga |
116 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||| | |||||| ||||| ||| || |||| || |||||| |||||||||||||| | | ||||| |
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|
| T |
7119462 |
atcctcagttaaagtctctctatttaggtagaaatttacggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttga |
7119363 |
T |
|
| Q |
117 |
tttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaag |
216 |
Q |
| |
|
||| ||| |||| |||||||||||| |||||||||||||||| || || ||||||| |||||||| ||||||||||||||| |||| | ||||||| |
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|
| T |
7119362 |
tttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaag |
7119263 |
T |
|
| Q |
217 |
ctacttggaatgaactttgtagttc |
241 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
7119262 |
ctacttggaatgaactttgttgttc |
7119238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 7131940 - 7131716
Alignment:
| Q |
17 |
atcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttga |
116 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||| | |||||| ||||| ||| || |||| || |||||| |||||||||||||| | | ||||| |
|
|
| T |
7131940 |
atcctcagttaaagtctctctatttaggtagaaatttacggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttga |
7131841 |
T |
|
| Q |
117 |
tttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaag |
216 |
Q |
| |
|
||| ||| |||| |||||||||||| |||||||||||||||| || || ||||||| |||||||| ||||||||||||||| |||| | ||||||| |
|
|
| T |
7131840 |
tttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaag |
7131741 |
T |
|
| Q |
217 |
ctacttggaatgaactttgtagttc |
241 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
7131740 |
ctacttggaatgaactttgttgttc |
7131716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 6426814 - 6426590
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || | ||||||| |
|
|
| T |
6426814 |
cctcaattgaagtctctctatctgggtagaaattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacagctacttgatt |
6426715 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagct |
218 |
Q |
| |
|
| || ||| | | |||||| ||||||||||| |||| || || | |||||||||| ||| |||||||||||||| |||||| || ||||| || |
|
|
| T |
6426714 |
tgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaact |
6426615 |
T |
|
| Q |
219 |
acttggaatgaactttgtagttccc |
243 |
Q |
| |
|
|| |||||||||||||| ||||||| |
|
|
| T |
6426614 |
acatggaatgaactttgcagttccc |
6426590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 10579532 - 10579711
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||| |||||| || || |||||||| |||||| ||||||||||||| || ||||||||| |
|
|
| T |
10579532 |
cctcaattaaaatctctctatttgggtagaaattcattgttacgtgatgaaatgattataatgttagcttcctttttccccaatttgcagctgcttgatt |
10579631 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
| ||| |||| | |||||||| ||||||||| |||||| | |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
10579632 |
tgaatacttgcgaatacatatctgaaggtatttttcaagtttcaggaagatgtggtaagattaagcatttgaacttagcc |
10579711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 6432464 - 6432234
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||||||| ||| || |||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
6432464 |
cctcagttaaagtctctctatttgggtcacaattcatggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatt |
6432365 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagct |
218 |
Q |
| |
|
| || ||| || ||| | |||||||||||||||| || || ||||||||||| ||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
6432364 |
tgcgttggtgtcatcgtataaatgaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagct |
6432265 |
T |
|
| Q |
219 |
acttggaatgaactttgtagttcccatgctg |
249 |
Q |
| |
|
|| |||||||||||||| |||||||| |||| |
|
|
| T |
6432264 |
acatggaatgaactttgaagttcccaagctg |
6432234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 6410324 - 6410079
Alignment:
| Q |
4 |
gagtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatt |
103 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| | | ||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||| |
|
|
| T |
6410324 |
gagtttggtgtataccctcaattaaagtctctctatttggattacaatacatcgttaagtgatgaaataatcattttgtttgcttccatttttcccaatt |
6410225 |
T |
|
| Q |
104 |
tagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattg-agaagatgttgtaagattaggcatttgaacttagccttct |
202 |
Q |
| |
|
|| | | |||||||| | ||| | | |||||| |||||||||||||||| || |||| |||||||||| ||| ||||||| ||||||||| | |
|
|
| T |
6410224 |
tacaactacttgatttgacgggttgccagcaaatatctgaaggtatttgtcaagttttacagaa-atgttgtaagcttaagcatttggacttagcctatt |
6410126 |
T |
|
| Q |
203 |
gtaagaaagtgaagctacttggaatgaactttgtagttcccatgctg |
249 |
Q |
| |
|
| || ||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
6410125 |
gcaaaaaagtgaagctacatggaatgaactttgaagttcccaagctg |
6410079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 8913783 - 8913955
Alignment:
| Q |
21 |
tcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttc |
120 |
Q |
| |
|
||||||||||||||| ||||||||| | |||| ||||||| |||| || ||||||||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
8913783 |
tcaattaaagtctctttatttgggtgacaatttgtggttaacggatgaaatcatcataatgtttgcttccattttttccaatttgcatatgcttgattt- |
8913881 |
T |
|
| Q |
121 |
aattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaactt |
194 |
Q |
| |
|
|||| ||| || | ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
8913882 |
aattattgagattatatatctaaaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaactt |
8913955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 6596724 - 6596903
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||| |||| || |||||| |||| || ||||| || ||||||| | |
|
|
| T |
6596724 |
cctcaattaaagtctctctatttgggtagaaatttttggttaagtaatgaaaatattataagattagcttccttttttcctaatttgcagctgcttgact |
6596823 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
| ||||| ||||||||| ||| |||||||||||||||| || || |||||| |||||||| ||||||||||| |||| |
|
|
| T |
6596824 |
tatattctaataataacatttctgaaggtatttgtcaagttttcaggagatgtgataagattaagcatttgaactgagcc |
6596903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 242
Target Start/End: Original strand, 7994023 - 7994201
Alignment:
| Q |
64 |
gatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattga |
163 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||| ||||| || |||| ||||| |||||||| ||| |||||| ||||||||||| | || || | |
|
|
| T |
7994023 |
gatgcaaacatcatattgtttgctaccattttcccaaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaa |
7994122 |
T |
|
| Q |
164 |
gaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcc |
242 |
Q |
| |
|
| | |||||||||||| |||||||||||| ||||| |||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
7994123 |
ggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttcc |
7994201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 6395167 - 6394943
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| ||||||| |||| || |||||||||||| |||||||||||||||||||| || | ||||||| |
|
|
| T |
6395167 |
cctcagttaaactctctctatttgggtacaaattactggttaatagatgaaataatcataatgtttacttccattttccccaatttacagctacttgatt |
6395068 |
T |
|
| Q |
119 |
tcaattcttg-taataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagc |
217 |
Q |
| |
|
| | ||| | | || |||||| |||||||||||||||| || | | |||||||||| ||| |||||||||||||| |||||| |||||||| | |
|
|
| T |
6395067 |
tgacacgttgctcacaa-atatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaac |
6394969 |
T |
|
| Q |
218 |
tacttggaatgaactttgtagttccc |
243 |
Q |
| |
|
||| |||||||||||||| ||||||| |
|
|
| T |
6394968 |
tacatggaatgaactttgcagttccc |
6394943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 6423520 - 6423289
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||| ||||||||||||| || |||||||||||||||||||||||||| |||||| | | ||||||| |
|
|
| T |
6423520 |
cctcaattaaagtctctctatttgggttacacttcgtggttaagtgatgaaatcatcataatgtttgcttccattttccctaatttaaaactacttgatt |
6423421 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagct |
218 |
Q |
| |
|
| || ||| || | |||| | | ||||||||||| || || | | |||| || || ||| |||||||||||||||| ||| | |||||||||| |
|
|
| T |
6423420 |
tgaagggttgccatcaaatatttgatggtatttgtcatgttttacggaaatgtcgtgagcttaaacatttgaacttagcctattgtgaacaagtgaagct |
6423321 |
T |
|
| Q |
219 |
acttggaatgaactttgtagttcccatgctgg |
250 |
Q |
| |
|
|| || |||||||||| |||||||| ||||| |
|
|
| T |
6423320 |
acgtgcaatgaacttttaagttcccaagctgg |
6423289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 19632739 - 19632566
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||||||||| ||| || | |||||| ||||| |||| |||||||| || |||||||| |
|
|
| T |
19632739 |
cctcaattaaagtctctctatttgggtcgaaatttacggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgtagcggcttgatt |
19632640 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaactta |
195 |
Q |
| |
|
| ||| ||| || |||||||||| | |||||||||||| || ||||||||||||||| | ||||||||||||| |
|
|
| T |
19632639 |
tgaatcgttgctattacatatctaatgctatttgtcaagtttt---aagatgttgtaagataacgcatttgaactta |
19632566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 14820993 - 14820893
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||| ||||| || ||||| ||| ||||||||||||||| |||||| || | ||||||| |
|
|
| T |
14820993 |
cctcaattgaagtctctctatttgggtcacaattcatggttaaatgatgaaataatcattttgtatgcttccattttcccaaatttaaagctacttgatt |
14820894 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
14820893 |
t |
14820893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 6403046 - 6402939
Alignment:
| Q |
136 |
atatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttg |
235 |
Q |
| |
|
|||||| |||||||||||||||| || || ||||||||||| |||||||||||||||||| | ||| | |||||||||||||||||| ||||||| |
|
|
| T |
6403046 |
atatctgaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttg |
6402947 |
T |
|
| Q |
236 |
tagttccc |
243 |
Q |
| |
|
||||||| |
|
|
| T |
6402946 |
cagttccc |
6402939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 6603001 - 6603071
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttc |
89 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||| ||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
6603001 |
cctcaattaaagtctctctatttaggtgacaatttatggttaagtgttcaaaaaatcataatgtttgcttc |
6603071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 6585150 - 6585208
Alignment:
| Q |
136 |
atatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaactt |
194 |
Q |
| |
|
|||||| ||||||||||||| || || || ||||||| ||| ||||||||||||||||| |
|
|
| T |
6585150 |
atatctgaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactt |
6585208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 6585078 - 6585106
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaa |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6585078 |
cctcaattaaagtctctctatttgggtaa |
6585106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 9411622 - 9411558
Alignment:
| Q |
55 |
tggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgattt |
119 |
Q |
| |
|
|||||||| ||| ||| |||| || |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
9411622 |
tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgattt |
9411558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 13470511 - 13470753
Alignment:
| Q |
2 |
tcgagtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaa |
101 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
13470511 |
tcgaggttggtgtataccctcaattaaagtctctctatttgggaaaaaatcaatggttaagtgatgaaggcatcataatgtttgcttccaatttccccaa |
13470610 |
T |
|
| Q |
102 |
tttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttc |
201 |
Q |
| |
|
||| || |||||||||| |||| ||| ||| | |||| ||||||||||||||||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
13470611 |
tttgcagctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctat |
13470710 |
T |
|
| Q |
202 |
tgtaagaaagtgaagctacttggaatgaactttgtagttccca |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13470711 |
tgtaaaaaagtgaagctacttggaatgaactttgttgttccca |
13470753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 51764236 - 51764459
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
51764236 |
cctcaattaaagtctctctatctgggtgaaaatacatggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgatt |
51764335 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagct |
218 |
Q |
| |
|
| |||||||| ||| ||||||||||||| | ||| |||| || || ||||||| ||||||||||||||||||| || || ||| | ||||||||| |
|
|
| T |
51764336 |
ttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagct |
51764435 |
T |
|
| Q |
219 |
acttggaatgaactttgtagttcc |
242 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
51764436 |
acttggaatgaactttgcagttcc |
51764459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 51113580 - 51113802
Alignment:
| Q |
22 |
caattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttca |
121 |
Q |
| |
|
||||||||||||||| | |||| | | ||| |||||||||| |||| | ||||||||| |||||||||||||||||||| | || | |||||||| | |
|
|
| T |
51113580 |
caattaaagtctctccagttggatcacaatccatggttaagagatgagagcatcataatgattgcttccattttccccaatctgcagcttcttgatttaa |
51113679 |
T |
|
| Q |
122 |
attcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctact |
221 |
Q |
| |
|
| ||| || | ||||| |||||||||||||||| || | ||||||||||| |||||||||||||| ||||| | |||| ||| |||||||||| |
|
|
| T |
51113680 |
ctcattgctatgagatatccgaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctact |
51113779 |
T |
|
| Q |
222 |
tggaatgaactttgtagttccca |
244 |
Q |
| |
|
|||||||||||||| || ||||| |
|
|
| T |
51113780 |
tggaatgaactttgaagctccca |
51113802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 514521 - 514703
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||| ||||||||||||| | | |||||||| ||||| |||| ||| | |||||||||||||| |||||||| ||||| || | |||||| |
|
|
| T |
514521 |
cctcaattaaaatctctctatttggctcacaattcatgcttaagagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatt |
514620 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatct---aaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
| | | |||| ||||||||||| ||| |||| |||||||| || | ||||| | ||||||||||||||||||||||||| |
|
|
| T |
514621 |
tgagctattgtgataacatatctgacaaaagtatctgtcaagttttaaagagatggtctaagattaggcatttgaacttagcc |
514703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 10614911 - 10614671
Alignment:
| Q |
4 |
gagtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatt |
103 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||| |||||| |||||||| |||| | || |||| ||||||||||| ||||||||||| |
|
|
| T |
10614911 |
gagtttggtgtataccctcaattaaagtctctctatttgggaaaaaatcagtggttaagcgatgaaggcattataaagtttgcttccaatttccccaatt |
10614812 |
T |
|
| Q |
104 |
tagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctg |
203 |
Q |
| |
|
| | |||||||||| ||| ||| ||| | ||| | |||||||||||||||| || || | |||||||||||||||||||||||||||||||| || |
|
|
| T |
10614811 |
tgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattg |
10614712 |
T |
|
| Q |
204 |
taagaaagtgaagctacttggaatgaactttgtagttccca |
244 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
10614711 |
taaaaaagtgaagctacttggaatgaacgttgttgttccca |
10614671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 10169926 - 10170105
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
|||||||| |||||||||||||||| | | ||| ||||| |||| |||| | | |||||||||||| |||||||||| || ||||| || || |||||| |
|
|
| T |
10169926 |
cctcaattgaagtctctctatttggcttacaatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagctgtttgatt |
10170025 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
| || ||||| ||| ||||||| |||| ||||||||||| || || || |||| ||| ||||||||||| || |||||| |
|
|
| T |
10170026 |
tgaactcttgcaatcacatatcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaatttagcc |
10170105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 10177451 - 10177630
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
|||||||| |||||||||||||||| | | ||| ||||| |||| |||| | | |||||||||||| |||||||||| || ||||| || || |||||| |
|
|
| T |
10177451 |
cctcaattgaagtctctctatttggcttacaatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagctgtttgatt |
10177550 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
| || ||||| ||| ||||||| |||| ||||||||||| || || || |||| ||| ||||||||||| || |||||| |
|
|
| T |
10177551 |
tgaactcttgcaatcacatatcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaatttagcc |
10177630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 15091932 - 15092123
Alignment:
| Q |
4 |
gagtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatt |
103 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| | | |||| |||||||||||| || |||| ||| ||||||||||||||||||| | |
|
|
| T |
15091932 |
gagtttggtgtataccctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaact |
15092031 |
T |
|
| Q |
104 |
tagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaactta |
195 |
Q |
| |
|
||||| | |||||||| | ||| ||||||||||| ||||||||| |||||| || || | ||||| |||| ||| |||||||||||| |
|
|
| T |
15092032 |
tagagctacttgatttgggtcattgctataacatatctcaaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaactta |
15092123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 19468295 - 19468526
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||||| |||||| |||| | | |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
19468295 |
cctcaattaaagtatctctacttggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatt |
19468394 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagct |
218 |
Q |
| |
|
| || || || || ||||||| |||| ||||||||||| || || || |||| ||| ||||||||||| ||||||||| |||| | |||||| || |
|
|
| T |
19468395 |
tgaactcatgcaaccacatatcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatct |
19468494 |
T |
|
| Q |
219 |
acttggaatgaactttgtagttcccatgctgg |
250 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |
|
|
| T |
19468495 |
acttggagtgaactttgtagttcccaagctgg |
19468526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 9581374 - 9581198
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| ||| ||||| ||| ||| ||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
9581374 |
cctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatc |
9581275 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaa---aggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaac |
192 |
Q |
| |
|
| ||| |||||||||||| ||||||||||||||| || | |||||||||| ||||||| ||||||||| |
|
|
| T |
9581274 |
tgcgccattgctgtaacatatctaaaagaggtatttgtcaagttttaaaaagatgttgtcagattagacatttgaac |
9581198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 9586942 - 9586844
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgat |
117 |
Q |
| |
|
|||||||| |||||||| |||||||| ||| ||||||||| ||| ||| ||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
9586942 |
cctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat |
9586844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 29691334 - 29691373
Alignment:
| Q |
80 |
tgtttgcttccattttccccaatttagaggtgcttgattt |
119 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
29691334 |
tgtttgcttccattttccccaacttggaggtgcttgattt |
29691373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 29718846 - 29718885
Alignment:
| Q |
80 |
tgtttgcttccattttccccaatttagaggtgcttgattt |
119 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
29718846 |
tgtttgcttccattttccccaacttggaggtgcttgattt |
29718885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 29658812 - 29658858
Alignment:
| Q |
73 |
atcataatgtttgcttccattttccccaatttagaggtgcttgattt |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
29658812 |
atcatattgtttgcttccattttccccaacttggaagtgcttgattt |
29658858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 28525328 - 28525142
Alignment:
| Q |
5 |
agtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaattt |
104 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| ||||| || | |||||||||||||| || | ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
28525328 |
agtttggtctacatcctcaattaaagtctctcaatttgtgtgacaattcatggttaagggacgaaaatatcataaggtttgcttccattttccacaattt |
28525229 |
T |
|
| Q |
105 |
agaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaa |
191 |
Q |
| |
|
||||||||| |||| | |||||| ||||||||||| ||||||||||||| || || |||||||||||||| ||| ||||||| |
|
|
| T |
28525228 |
ggaggtgcttaatttggaccattgtaagcacatatctaaatgtatttgtcaagttttaaggagatgttgtaagatgagggatttgaa |
28525142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 20477864 - 20477963
Alignment:
| Q |
5 |
agtttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaattt |
104 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| |||||| | ||| ||||||||||||||| || || ||||| |||||||| || ||||||||||| |
|
|
| T |
20477864 |
agtttggtgtatatcctcgattgaagtctctctacttgggtcataatccatggttaagtgatgaaataataataatatttgcttctatgttccccaattt |
20477963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 21834174 - 21834405
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
21834174 |
cctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatt |
21834273 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagct |
218 |
Q |
| |
|
| | ||||| | | ||||| |||||||||| |||| || || | |||||||||||||| ||||||||||||| | ||| | ||||||||||| |
|
|
| T |
21834274 |
tgacttcttccacacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagct |
21834373 |
T |
|
| Q |
219 |
acttggaatgaactttgtagttcccatgctgg |
250 |
Q |
| |
|
|| | | || |||||||||||||||| ||||| |
|
|
| T |
21834374 |
acatagtatcaactttgtagttcccaagctgg |
21834405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 53761685 - 53761793
Alignment:
| Q |
136 |
atatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttg |
235 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
53761685 |
atatctaaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttg |
53761784 |
T |
|
| Q |
236 |
tagttccca |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
53761785 |
tagttccca |
53761793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 547219 - 547040
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatt |
118 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||||| |||| |||| || |||| ||||||| ||||||| ||||||||||| | ||||||||| |
|
|
| T |
547219 |
cctcaattgaagtctctccatttggctaaaaattcatgcataagagatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatt |
547120 |
T |
|
| Q |
119 |
tcaattcttgtaataacatatctaaag---gtatttgtcaagtattgagaagatgttgtaagattaggcatttgaactta |
195 |
Q |
| |
|
| | || |||| |||||||||| ||| |||||||| | || || || |||||||||||||| ||||||||||||||| |
|
|
| T |
547119 |
taagttattgtcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttgaactta |
547040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 570617 - 570476
Alignment:
| Q |
53 |
catggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttg |
152 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| |||||||||||||| || | |||||||| | || ||| ||| | ||||| | ||||||| |
|
|
| T |
570617 |
catggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttg |
570518 |
T |
|
| Q |
153 |
tcaagtattgagaagatgttgtaagattaggcatttgaacttagc |
197 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
570517 |
tcaagtttt---aagatgttgtaaacttaggcatttgaacttagc |
570476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 641212 - 641039
Alignment:
| Q |
25 |
ttaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaatt |
124 |
Q |
| |
|
||||||| |||| |||||| | | |||| ||| |||| |||| ||| || ||||||||||||||||| ||||| |||||| | |||||||||| | | |
|
|
| T |
641212 |
ttaaagtgtctccatttggctcataatttttggctaagagatgaaaacataataatgtttgcttccatgttcccaaatttacggttgcttgatttgagtg |
641113 |
T |
|
| Q |
125 |
cttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
|||| || || ||||| |||| |||| |||||| || || | ||||||||| |||| ||||||||||||||| |
|
|
| T |
641112 |
attgtgatcacgtatctgaaggaatttttcaagttttaaggatatgttgtaatgttagacatttgaacttagcc |
641039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 8187011 - 8187072
Alignment:
| Q |
143 |
aaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgt |
204 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
8187011 |
aaggtatttgtcaagttttgaagagatgttgtgagattagggatttgaacttagcctactgt |
8187072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 371228 - 371148
Alignment:
| Q |
17 |
atcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttcc |
97 |
Q |
| |
|
||||||||||||| ||||||||||||| | | |||||||||||||| |||| | | | |||||||||||||| ||||||| |
|
|
| T |
371228 |
atcctcaattaaaatctctctatttggctcacaattcatggttaagagatgaataccttataatgtttgcttcaattttcc |
371148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 570840 - 570752
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaa---tatcataatgtttgcttccattttccccaattt |
104 |
Q |
| |
|
|||||||| |||||||| | |||| | | ||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
570840 |
cctcaattgaagtctctatccttggctcacaatacatggttaagtgatgaaaacattattataatgtttgcttccattttccccaattt |
570752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 1519063 - 1519113
Alignment:
| Q |
143 |
aaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaact |
193 |
Q |
| |
|
|||||||||||||||| || ||||||||||| | ||||||||||||||||| |
|
|
| T |
1519063 |
aaggtatttgtcaagttttaagaagatgttgaaggattaggcatttgaact |
1519113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 53761591 - 53761646
Alignment:
| Q |
49 |
aattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaattt |
104 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| |||||| || |||||||||||||| |
|
|
| T |
53761591 |
aattcttggttaagtgatgaaaacatcataacgtttgcatcaattttccccaattt |
53761646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 1552706 - 1552739
Alignment:
| Q |
165 |
aagatgttgtaagattaggcatttgaacttagcc |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
1552706 |
aagatgttgtaagattagacatttgaacttagcc |
1552739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 3438496 - 3438540
Alignment:
| Q |
153 |
tcaagtattgagaagatgttgtaagattaggcatttgaacttagc |
197 |
Q |
| |
|
|||||| || || ||||||||||||||||| |||||||||||||| |
|
|
| T |
3438496 |
tcaagttttaaggagatgttgtaagattagacatttgaacttagc |
3438540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 17627852 - 17627937
Alignment:
| Q |
19 |
cctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaattt |
104 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||| | || | |||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
17627852 |
cctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgcttccattttccccaattt |
17627937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 17636316 - 17636370
Alignment:
| Q |
142 |
aaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttag |
196 |
Q |
| |
|
||||||||||||||||| || || |||||| ||| ||||||||||||||||||| |
|
|
| T |
17636316 |
aaaggtatttgtcaagttttaaggggatgttctaatattaggcatttgaacttag |
17636370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 1037511 - 1037640
Alignment:
| Q |
73 |
atcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaag---gtatttgtcaagtattgagaagat |
169 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | | |||||||| | || || ||||||||||| ||| |||||||| |||| || || |||| |
|
|
| T |
1037511 |
atcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagat |
1037610 |
T |
|
| Q |
170 |
gttgtaagattaggcatttgaacttagcct |
199 |
Q |
| |
|
|||||||| |||| |||||||| ||||||| |
|
|
| T |
1037611 |
gttgtaaggttagacatttgaatttagcct |
1037640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 1388 - 1440
Alignment:
| Q |
147 |
tatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagcct |
199 |
Q |
| |
|
|||||||||||| || || ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
1388 |
tatttgtcaagttttaaggagatgttataagattagacatttgaacttagcct |
1440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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