View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_300 (Length: 250)
Name: NF11982A_low_300
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_300 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 37704454 - 37704684
Alignment:
| Q |
20 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
|
| Q |
120 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcac |
37704653 |
T |
|
| Q |
220 |
gaaagttggaatcttatttcaagttgtgata |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37704654 |
gaaagttggaatcttatttcaagttgtgata |
37704684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 37698974 - 37699206
Alignment:
| Q |
21 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
118 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
|
| Q |
119 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||| |
|
|
| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagc |
37699173 |
T |
|
| Q |
218 |
acgaaagttggaatcttatttcaagttgtgata |
250 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||| |
|
|
| T |
37699174 |
actaaagttggaatcttattgcaagttgtgata |
37699206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 37437520 - 37437746
Alignment:
| Q |
20 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
119 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||| |||||||||||| | |||| |||||||||| |
|
|
| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
|
| Q |
120 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagca |
218 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| ||||||||||||| |
|
|
| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc- |
37437717 |
T |
|
| Q |
219 |
cgaaagttggaatcttatttcaagttgtgata |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
37437718 |
---aagttggaatcttattgcaagttgtgata |
37437746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 37698636 - 37698846
Alignment:
| Q |
20 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| | | |||| |||||||||| |
|
|
| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg-----------------accgtatagtgatatgacaa |
37698718 |
T |
|
| Q |
120 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacg----taatt |
214 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||| ||||| |
|
|
| T |
37698719 |
ttggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaatt |
37698810 |
T |
|
| Q |
215 |
agcacgaaagttggaatcttatttcaagttgtgata |
250 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
37698811 |
agcactaaagttggaatcttattgcaagttgtgata |
37698846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 16841109 - 16841007
Alignment:
| Q |
148 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
246 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
247 |
gata |
250 |
Q |
| |
|
|||| |
|
|
| T |
16841010 |
gata |
16841007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University