View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_306 (Length: 250)

Name: NF11982A_low_306
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_306
NF11982A_low_306
[»] chr1 (8 HSPs)
chr1 (17-221)||(51052414-51052618)
chr1 (17-221)||(11909107-11909311)
chr1 (17-221)||(35540983-35541187)
chr1 (17-221)||(6050537-6050741)
chr1 (48-144)||(16917842-16917938)
chr1 (49-130)||(47623111-47623192)
chr1 (48-130)||(43388392-43388474)
chr1 (48-197)||(37191243-37191392)
[»] chr5 (22 HSPs)
chr5 (17-221)||(30732316-30732520)
chr5 (17-221)||(12825133-12825337)
chr5 (17-221)||(27117163-27117367)
chr5 (17-220)||(42513655-42513858)
chr5 (101-221)||(12820035-12820155)
chr5 (18-198)||(23238341-23238521)
chr5 (17-211)||(28535677-28535871)
chr5 (33-195)||(8227986-8228148)
chr5 (17-198)||(35983793-35983974)
chr5 (48-158)||(19255155-19255265)
chr5 (25-198)||(42928088-42928261)
chr5 (17-154)||(31641513-31641649)
chr5 (48-144)||(25857457-25857553)
chr5 (48-134)||(27767063-27767149)
chr5 (49-130)||(10776789-10776870)
chr5 (48-144)||(8300215-8300311)
chr5 (48-130)||(33385407-33385489)
chr5 (48-184)||(18359125-18359260)
chr5 (157-221)||(3418717-3418781)
chr5 (38-154)||(33169659-33169775)
chr5 (50-158)||(27795480-27795588)
chr5 (25-130)||(26072917-26073022)
[»] chr2 (9 HSPs)
chr2 (17-221)||(4552103-4552307)
chr2 (48-158)||(41207013-41207123)
chr2 (48-154)||(15917655-15917761)
chr2 (50-196)||(28252679-28252825)
chr2 (48-134)||(12645557-12645643)
chr2 (48-154)||(17764995-17765101)
chr2 (50-169)||(14439738-14439857)
chr2 (48-151)||(40176672-40176775)
chr2 (48-157)||(38604407-38604516)
[»] chr3 (21 HSPs)
chr3 (17-221)||(2364211-2364415)
chr3 (17-221)||(7312710-7312914)
chr3 (17-221)||(19920231-19920435)
chr3 (17-221)||(10323573-10323777)
chr3 (17-198)||(34332817-34332998)
chr3 (17-211)||(40930530-40930724)
chr3 (47-134)||(7032339-7032426)
chr3 (48-130)||(29523778-29523860)
chr3 (48-130)||(11203844-11203926)
chr3 (49-130)||(33496572-33496653)
chr3 (48-130)||(12342259-12342340)
chr3 (48-154)||(26771022-26771128)
chr3 (61-144)||(7031063-7031146)
chr3 (48-169)||(35214404-35214525)
chr3 (48-130)||(36801108-36801190)
chr3 (38-147)||(963186-963295)
chr3 (38-154)||(2755843-2755959)
chr3 (48-172)||(19890661-19890785)
chr3 (61-151)||(16178952-16179042)
chr3 (38-154)||(3140853-3140969)
chr3 (34-154)||(15312584-15312704)
[»] scaffold0369 (1 HSPs)
scaffold0369 (17-221)||(11207-11411)
[»] scaffold0034 (1 HSPs)
scaffold0034 (17-221)||(105845-106049)
[»] chr8 (17 HSPs)
chr8 (17-221)||(7924320-7924524)
chr8 (17-221)||(8299737-8299941)
chr8 (17-221)||(172037-172241)
chr8 (17-198)||(13396345-13396526)
chr8 (27-198)||(32266521-32266692)
chr8 (17-198)||(41665371-41665552)
chr8 (17-211)||(9922545-9922739)
chr8 (48-144)||(20824307-20824403)
chr8 (48-134)||(13200144-13200230)
chr8 (48-130)||(17699507-17699589)
chr8 (48-169)||(2170328-2170449)
chr8 (48-130)||(37434157-37434239)
chr8 (63-148)||(34137011-34137096)
chr8 (50-158)||(13879522-13879630)
chr8 (63-130)||(43270475-43270542)
chr8 (83-161)||(2529880-2529958)
chr8 (48-158)||(25090384-25090494)
[»] chr7 (11 HSPs)
chr7 (17-221)||(4938130-4938334)
chr7 (17-198)||(11277254-11277435)
chr7 (17-198)||(47876940-47877121)
chr7 (17-198)||(29967932-29968113)
chr7 (17-190)||(235439-235614)
chr7 (17-198)||(37919501-37919682)
chr7 (17-198)||(17720592-17720773)
chr7 (131-221)||(31177421-31177511)
chr7 (48-197)||(25619417-25619566)
chr7 (48-130)||(18532653-18532735)
chr7 (48-170)||(37254743-37254865)
[»] chr4 (16 HSPs)
chr4 (17-221)||(23642593-23642797)
chr4 (17-221)||(47418738-47418942)
chr4 (17-212)||(13270893-13271088)
chr4 (17-221)||(47685897-47686101)
chr4 (17-198)||(15740178-15740359)
chr4 (17-221)||(1828542-1828746)
chr4 (17-198)||(19755221-19755405)
chr4 (17-198)||(19784401-19784585)
chr4 (17-198)||(7403870-7404051)
chr4 (48-151)||(55725719-55725822)
chr4 (48-130)||(12697838-12697920)
chr4 (48-130)||(45472742-45472824)
chr4 (50-148)||(11587233-11587331)
chr4 (48-129)||(8361126-8361207)
chr4 (48-130)||(20002750-20002832)
chr4 (166-221)||(159842-159897)
[»] chr6 (14 HSPs)
chr6 (40-221)||(12734059-12734240)
chr6 (17-198)||(2553594-2553775)
chr6 (17-198)||(18651236-18651417)
chr6 (17-186)||(24767426-24767595)
chr6 (17-134)||(21168220-21168337)
chr6 (48-144)||(17579114-17579210)
chr6 (48-144)||(17573688-17573784)
chr6 (48-130)||(17606367-17606449)
chr6 (48-134)||(21630140-21630226)
chr6 (50-187)||(14373026-14373163)
chr6 (48-130)||(10577282-10577364)
chr6 (63-148)||(15958861-15958946)
chr6 (48-197)||(20883066-20883215)
chr6 (38-147)||(13937708-13937817)
[»] scaffold0472 (1 HSPs)
scaffold0472 (17-198)||(3209-3390)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 51052618 - 51052414
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 51052419  T
Q  217 atttg 221  Q
    |||||    
T  51052418 atttg 51052414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 11909107 - 11909311
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgtttctc 11909306  T
Q  217 atttg 221  Q
    |||||    
T  11909307 atttg 11909311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 35541187 - 35540983
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| || ||||| ||| ||||||||||||||||||| |||||| |||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactc 35540988  T
Q  217 atttg 221  Q
    |||||    
T  35540987 atttg 35540983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 6050741 - 6050537
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| ||||||||||||||||||| |||||| |||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgttactc 6050542  T
Q  217 atttg 221  Q
    |||||    
T  6050541 atttg 6050537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 16917842 - 16917938
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  16917842 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 47623111 - 47623192
Alignment:
Q  49 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| || ||||||||    
T  47623111 atatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 43388474 - 43388392
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||||||||||| |  |||||||||| ||||||||    
T  43388474 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctac 43388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 37191243 - 37191392
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | |||||||||| ||||| | | ||||| | ||||||||||||||| ||  |||| ||||| |||||||| |||   || ||||||     
T  37191243 aatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcag 37191342  T
Q  148 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggg 197  Q
    |||||||||||  || ||||||||| || || |||||  | |||||||||    
T  37191343 atcgtggcattacatctgtggaggatcgattttgtgtcacgggatgtggg 37191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 30732316 - 30732520
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 30732515  T
Q  217 atttg 221  Q
    |||||    
T  30732516 atttg 30732520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 12825337 - 12825133
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 12825138  T
Q  217 atttg 221  Q
    |||||    
T  12825137 atttg 12825133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 27117163 - 27117367
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    || |||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctc 27117362  T
Q  217 atttg 221  Q
    |||||    
T  27117363 atttg 27117367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 42513858 - 42513655
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 42513659  T
Q  217 attt 220  Q
    ||||    
T  42513658 attt 42513655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 12820035 - 12820155
Alignment:
Q  101 ttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggatt 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  201 gtcgatgatgtttctcatttg 221  Q
    ||||| ||||| |||||||||    
T  12820135 gtcgaagatgtctctcatttg 12820155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 23238521 - 23238341
Alignment:
Q  18 acatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaggg 117  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||| |    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  118 atcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtggga 23238341  T

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Target: chr5; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 28535677 - 28535871
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||| |||||||| || || ||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgt 211  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| || | | ||||||||||| ||||||| ||| || |||||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgt 28535871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 8228148 - 8227986
Alignment:
Q  33 ccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaa 132  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  133 aacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtg 195  Q
    ||  |||||||||||| |||| |||| ||  | |||||| |||||| ||||||||||||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtg 8227986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 35983793 - 35983974
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||| |||||||| || || ||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
     |||||||||||||||||  |||||||||||| | || |||| ||  | |||||| |||||| ||||||| ||| |||||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtggga 35983974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 19255155 - 19255265
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||    
T  19255155 aatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaa 19255254  T
Q  148 atcgtggcatt 158  Q
    || ||||||||    
T  19255255 attgtggcatt 19255265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 42928261 - 42928088
Alignment:
Q  25 aggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 124  Q
    |||| |||||||||||||| |  |||||||| ||| ||||| |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  42928261 aggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagggatcggtt 42928162  T
Q  125 acctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    | ||||||||  ||||||| ||||  |||||||| ||    |||||| |||||| ||||| |||||||| ||||    
T  42928161 aactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcggga 42928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 31641649 - 31641513
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||| || ||||| || || ||||| ||| ||||||||| |||||||||||| ||||| ||||||||||| ||| |||| ||||||    
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtgg 154  Q
    ||||||||||||||||||  |||||||||||| |||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 25857457 - 25857553
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  25857457 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 27767149 - 27767063
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 134  Q
    |||||||| ||| |||||||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||||||    
T  27767149 aatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 10776870 - 10776789
Alignment:
Q  49 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    ||||||| ||| |||||||||||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  10776870 atatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 8300215 - 8300311
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| |||||||| |||  ||||||||    
T  8300215 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 33385407 - 33385489
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||  | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  33385407 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 18359125 - 18359260
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | | |||||||||||||||| | ||||| || ||||||||||||||  |  |||||||||| |||||||| |||   || ||||||     
T  18359125 aatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 18359224  T
Q  148 atcgtggcattctatatgtggaggagcggttatgtgt 184  Q
    ||||| ||||| ||||||||||||| ||||| |||||    
T  18359225 atcgt-gcattatatatgtggaggatcggttttgtgt 18359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 3418781 - 3418717
Alignment:
Q  157 ttctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctcatttg 221  Q
    |||||| ||||||||| || ||||| ||| ||||||||||||||||||| |||||| ||||||||    
T  3418781 ttctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttg 3418717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 33169775 - 33169659
Alignment:
Q  38 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 137  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  138 aatttggcaaatcgtgg 154  Q
    |||||||||| ||||||    
T  33169675 aatttggcaagtcgtgg 33169659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 27795588 - 27795480
Alignment:
Q  50 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 149  Q
    |||||| ||||| ||||| |||||||| |||||||||||  |  || ||||||||||  |  |||||||||| || ||||| |||   ||||||||||||    
T  27795588 tatggagttagtctggcacaaacaggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaaat 27795489  T
Q  150 cgtggcatt 158  Q
    |||||||||    
T  27795488 cgtggcatt 27795480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 26073022 - 26072917
Alignment:
Q  25 aggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggtt 124  Q
    |||| |||||||| || || || ||| |||| ||| ||||||||||| | |||||| | |||||  ||||| ||| |||||||||  |||||||||| ||    
T  26073022 aggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagggatcgatt 26072923  T
Q  125 acctac 130  Q
    ||||||    
T  26072922 acctac 26072917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 4552307 - 4552103
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgtttctc 4552108  T
Q  217 atttg 221  Q
    |||||    
T  4552107 atttg 4552103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 41207123 - 41207013
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  41207123 aatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaa 41207024  T
Q  148 atcgtggcatt 158  Q
    |||||||||||    
T  41207023 atcgtggcatt 41207013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 15917761 - 15917655
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    ||||| || ||| ||| ||||||| |||||||||| ||||| | ||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||    
T  15917761 aatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaa 15917662  T
Q  148 atcgtgg 154  Q
    |||||||    
T  15917661 atcgtgg 15917655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 28252825 - 28252679
Alignment:
Q  50 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 149  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| |||||||| ||    |||||||||||     
T  28252825 tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctacgaagggaaatttggcaaac 28252726  T
Q  150 cgtggcattctatatgtggaggagcggttatgtgtttctggatgtgg 196  Q
    | ||||||| |  || |||||| ||||||||||||||| || |||||    
T  28252725 catggcattattcatatggaggggcggttatgtgtttccggttgtgg 28252679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 12645643 - 12645557
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 134  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||    
T  12645643 aatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaa 12645557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 17764995 - 17765101
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | ||||||||||||| |||||| ||||| ||||| ||||||||||| ||  |||||||||  |||||||| |||   ||||||||||    
T  17764995 aatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaa 17765094  T
Q  148 atcgtgg 154  Q
    | |||||    
T  17765095 accgtgg 17765101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 14439857 - 14439738
Alignment:
Q  50 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 149  Q
    |||||| ||| | |||||||||||||||||| | ||||| |||||| | ||||| |||||  |||||||||| |||||||| |||   ||||||| | |     
T  14439857 tatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctactaaatcaaatttggtagaa 14439758  T
Q  150 cgtggcattctatatgtgga 169  Q
    ||||| ||||||| ||||||    
T  14439757 cgtgggattctatctgtgga 14439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 40176775 - 40176672
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| ||  |||||||||||||  |  |||||||||| |||||||| ||| | |||||| |||    
T  40176775 aatatggagttagtctggcacaaacaggtacctctaaaagtttcagtccttgcttggcggttgttgagggatcgtttacctactaaagtcaatttgacaa 40176676  T
Q  148 atcg 151  Q
    ||||    
T  40176675 atcg 40176672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 38604407 - 38604516
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | ||||||||||| || ||||| ||||| || |||||||| ||||  ||  | || ||||| |||||||||| | | |||||||||     
T  38604407 aatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggctgctgttaagagatcgtttacctacaatagtcaatttggcat 38604506  T
Q  148 atcgtggcat 157  Q
    ||||||||||    
T  38604507 atcgtggcat 38604516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 2364415 - 2364211
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 2364216  T
Q  217 atttg 221  Q
    |||||    
T  2364215 atttg 2364211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 7312914 - 7312710
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||    
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgtttctc 7312715  T
Q  217 atttg 221  Q
    |||||    
T  7312714 atttg 7312710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 19920231 - 19920435
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgcttctc 19920430  T
Q  217 atttg 221  Q
    |||||    
T  19920431 atttg 19920435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 10323573 - 10323777
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 10323772  T
Q  217 atttg 221  Q
    |||||    
T  10323773 atttg 10323777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 34332817 - 34332998
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||| ||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 34332998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 40930530 - 40930724
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||| || ||||| || || || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgt 211  Q
    ||| ||||||||||||||  |||||||||||| |||||| || ||  | |||||| |||||| ||||||||||| |||||||  ||||| |||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgt 40930724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 7032426 - 7032339
Alignment:
Q  47 taatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 134  Q
    |||| |||| || |||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||    
T  7032426 taatttggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaa 7032339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 29523778 - 29523860
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  29523778 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11203926 - 11203844
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  11203926 aatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 33496653 - 33496572
Alignment:
Q  49 atatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    ||||||| ||| |||||||||||||||||||| | ||||| |||||| |||||||||||||  |||||||||| ||||||||    
T  33496653 atatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 12342259 - 12342340
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||| | | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12342259 aatatggagttaatttggcataaacaggttctt-taaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 26771022 - 26771128
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | ||||||||||||| |||||| ||||| ||||| ||| ||||||| ||| |||||||||| |||||||| |||   ||||||||||    
T  26771022 aatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaa 26771121  T
Q  148 atcgtgg 154  Q
    | |||||    
T  26771122 accgtgg 26771128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 7031063 - 7031146
Alignment:
Q  61 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||||||||||||||| | ||| | ||||||||||||||||| ||  |||||||||| |||||||| |||  ||||||||    
T  7031063 tttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 35214404 - 35214525
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||| ||||||  |  |||||||||| || ||||| |||   |||||| ||     
T  35214404 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcggatgttgagggatcgtttgcctactaaatcaaatttgccag 35214503  T
Q  148 atcgtggcattctatatgtgga 169  Q
    | ||||| ||||||||||||||    
T  35214504 aacgtgggattctatatgtgga 35214525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 36801108 - 36801190
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| ||| ||||||| |||||||  | ||||| | |||||||||||||| ||| ||||||||||| ||||||||    
T  36801108 aatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 963186 - 963295
Alignment:
Q  38 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 137  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  138 aatttggcaa 147  Q
    ||||||||||    
T  963286 aatttggcaa 963295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 2755959 - 2755843
Alignment:
Q  38 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 137  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| |||       
T  2755959 gttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctactaaataa 2755860  T
Q  138 aatttggcaaatcgtgg 154  Q
    |||||||||| ||||||    
T  2755859 aatttggcaagtcgtgg 2755843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 19890785 - 19890661
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | |||||||||||||||||| | ||||| || |||||||| | |||  |  |||||||||| |||||||| |||   || ||||||     
T  19890785 aatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgcattgcggttgttgagggatcgattacctactaaatccaacttggcag 19890686  T
Q  148 atcgtggcattctatatgtggagga 172  Q
    |||||||||||  || |||||||||    
T  19890685 atcgtggcattacatttgtggagga 19890661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 16179042 - 16178952
Alignment:
Q  61 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcg 151  Q
    |||||||||||||||| ||||| |||||||||||  |||| ||||| ||  ||| ||||||  ||||||| |||   ||||||||||||||    
T  16179042 tttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctacctactaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 3140969 - 3140853
Alignment:
Q  38 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 137  Q
    |||||| || |||||||| ||  ||||| | |||||||| ||| | ||||| |||||  |||||||||   | |||||||| ||||||||||| ||||      
T  3140969 gttacatcaaaatatggagttgatttggtacaaacaggtgcctttgaaagtgtctatatttgcttggcatttactgagggaccggttacctactaaacaa 3140870  T
Q  138 aatttggcaaatcgtgg 154  Q
    |||||||||| ||||||    
T  3140869 aatttggcaagtcgtgg 3140853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 15312704 - 15312584
Alignment:
Q  34 cccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaa 133  Q
    |||| ||||| || ||| |||| ||| |||||||||||||||| ||||| ||||| | |||  |||||||| |||| |||||| |||| || ||||  ||    
T  15312704 cccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgactgctgaggaatcgtttgcctattaa 15312605  T
Q  134 acttaatttggcaaatcgtgg 154  Q
    |   ||||||| |||||||||    
T  15312604 agagaatttggaaaatcgtgg 15312584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 11207 - 11411
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||| ||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgtttttc 11406  T
Q  217 atttg 221  Q
    |||||    
T  11407 atttg 11411  T

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Target: scaffold0034 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 105845 - 106049
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 106044  T
Q  217 atttg 221  Q
    |||||    
T  106045 atttg 106049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 7924524 - 7924320
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 7924325  T
Q  217 atttg 221  Q
    |||||    
T  7924324 atttg 7924320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 8299941 - 8299737
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||| |||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgttactc 8299742  T
Q  217 atttg 221  Q
    |||||    
T  8299741 atttg 8299737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 172241 - 172037
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    || |||||||| |||||||||||||||| ||| |||| |||||||| | ||||||||||||||||||||||||| ||||| | |||||| ||||||||||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgtttctc 172042  T
Q  217 atttg 221  Q
    |||||    
T  172041 atttg 172037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 13396526 - 13396345
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 13396345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 32266692 - 32266521
Alignment:
Q  27 gagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttac 126  Q
    ||||| || ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  32266692 gagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttac 32266593  T
Q  127 ctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    |||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  32266592 ctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 32266521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 41665371 - 41665552
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||     
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    |||| |||||||||||||  |||||||||||| | || |||| ||  | |||||| |||||| |||||||||||||||||||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtggga 41665552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 9922739 - 9922545
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||| || ||||| || ||  |||| ||| ||||||||| |||||||||||||||||| ||||||||||| || ||||||||||||    
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgt 211  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||| | ||||||||||| ||||||| ||| || |||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgt 9922545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 20824403 - 20824307
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  20824403 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 13200230 - 13200144
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 134  Q
    |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||  ||  |||||||||| ||||||||||||    
T  13200230 aatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaa 13200144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 17699589 - 17699507
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  17699589 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 2170449 - 2170328
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||||||||||||   |||||||||| |||||||| |||   ||||||| |     
T  2170449 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgaccgttgagggatcgtttacctactaaatcaaatttggtag 2170350  T
Q  148 atcgtggcattctatatgtgga 169  Q
    | ||||| ||||||| ||||||    
T  2170349 aacgtgggattctatctgtgga 2170328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 37434239 - 37434157
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| ||||||||||||| |||||| | ||||| ||||| ||||||||||||||  |||||||||| ||||||||    
T  37434239 aatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 34137011 - 34137096
Alignment:
Q  63 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 148  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||| ||| |||||| |||||||| |||   |||||||||||    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaa 34137096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 13879522 - 13879630
Alignment:
Q  50 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 149  Q
    |||||| ||||| ||||| ||| |||| |||||||||||  |  || ||||||||||  |  |||||||||| |||||||| |||   ||||||||||||    
T  13879522 tatggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaaat 13879621  T
Q  150 cgtggcatt 158  Q
    |||||||||    
T  13879622 cgtggcatt 13879630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 43270542 - 43270475
Alignment:
Q  63 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||||||||||||| | ||||| ||||||||| ||||||||||  ||| |||||| || |||||    
T  43270542 tggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctac 43270475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 2529958 - 2529880
Alignment:
Q  83 caaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattcta 161  Q
    |||||| || |||||||||||||| ||  |||||||||| ||||||||||||   ||||||| | ||||||| ||||||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattcta 2529880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 25090494 - 25090384
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||||| | ||| |||||||| ||||| ||||| || ||||||||||||||  |  ||||||||||  ||||||| |||   |||||| |||    
T  25090494 aatatggagttagtctagcacaaacaggtacctctaaaagtttcaatccttgcttggcggttgttgagggatcgactacctactaaagccaatttgacaa 25090395  T
Q  148 atcgtggcatt 158  Q
    |||| ||||||    
T  25090394 atcgcggcatt 25090384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 4938130 - 4938334
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 4938329  T
Q  217 atttg 221  Q
    |||||    
T  4938330 atttg 4938334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 11277254 - 11277435
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    |||||||||||||| |||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 11277435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 47877121 - 47876940
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||| || |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| |||||||||||||| ||||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcggga 47876940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 29968113 - 29967932
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||| ||||     
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    |||||||||||||| |||  |||||||||||| | ||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 29967932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 235439 - 235614
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  117 gatcggttacctacaaaactta--atttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctgg 190  Q
    ||||||||||||||||||   |  |||||||||| ||||||||| ||  | |||||| |||||| |||||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgg 235614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 37919682 - 37919501
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||| ||||| ||| ||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||     
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||| ||||||||||||||  |||||||||||| ||| ||||| ||  | |||||| |||||| ||||||||| | |||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtggga 37919501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 17720773 - 17720592
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||| || ||||| || ||  |||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||| | ||||||||| | |||||||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtggga 17720592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 31177421 - 31177511
Alignment:
Q  131 aaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctcatttg 221  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  31177421 aaaacttaatttgacaaatcgtggcattctatatgtggaggagcggttatgtgttgctggatgtgggattgtcgaagatgttactcatttg 31177511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 25619566 - 25619417
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | |||||||||||||||||| | ||||| |||||||||||||||||  |  ||||||| || |||||||| |||   || ||||||     
T  25619566 aatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcag 25619467  T
Q  148 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggg 197  Q
    |||||||||||  || ||||||||| || || |||||  | |||||||||    
T  25619466 atcgtggcattgcatctgtggaggaccgattttgtgtcacaggatgtggg 25619417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 18532735 - 18532653
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| | | |||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  18532735 aatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 37254865 - 37254743
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | ||||||||||||||| || | ||||| || ||||||||||||||  |  |||||||||| |||||||| |||   || ||||||     
T  37254865 aatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 37254766  T
Q  148 atcgtggcattctatatgtggag 170  Q
    || |||||||| ||| |||||||    
T  37254765 attgtggcattatatctgtggag 37254743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 23642593 - 23642797
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 23642792  T
Q  217 atttg 221  Q
    |||||    
T  23642793 atttg 23642797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 47418942 - 47418738
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||| | ||||||||||||||||| |||||| |||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggttatgcgttgcaggatgtgggattgtcgaagatgttactc 47418743  T
Q  217 atttg 221  Q
    |||||    
T  47418742 atttg 47418738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 13270893 - 13271088
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||    
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgtt 13271088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 47685897 - 47686101
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| | ||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctc 47686096  T
Q  217 atttg 221  Q
     ||||    
T  47686097 gtttg 47686101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 15740359 - 15740178
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |     
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  ||||||| |||  ||||||||| ||  | |||||| |||||| ||||||||||| |||||||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtggga 15740178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 1828542 - 1828746
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||  || |     
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctc 216  Q
    ||| ||||||||||||||  |||||||||||| ||||||||| ||  | |||||| |||||| ||||||||||| ||||||| ||| || ||||||  ||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatc 1828741  T
Q  217 atttg 221  Q
    |||||    
T  1828742 atttg 1828746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 19755405 - 19755221
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| | ||||||||||| || || ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctat---atgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  |||||||||||| |||| |||| |||    | |||||| |||||| |||||||||||||||||||    
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtggga 19755221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 19784401 - 19784585
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| | ||||||||||| || || ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctat---atgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  |||||||||||| |||| |||| |||    | |||||| |||||| |||||||||||||||||||    
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtggga 19784585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 7404051 - 7403870
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||| || |||||| | ||| ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||    
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||   ||||||||||| ||||||||| ||  | |||||| |||||| ||||| |||||||| ||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcggga 7403870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 55725719 - 55725822
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| ||||||||||||| |||||||| ||||| || |||||||||||||| ||  |||||||||| ||||||||||||   |||||||||     
T  55725719 aatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggcag 55725818  T
Q  148 atcg 151  Q
    ||||    
T  55725819 atcg 55725822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 12697920 - 12697838
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||| | ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||    
T  12697920 aatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 45472742 - 45472824
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||    
T  45472742 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 11587233 - 11587331
Alignment:
Q  50 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 148  Q
    |||||| ||| ||||||||||| || | ||| ||||||||||||| ||||||||||| ||||||||| |||| |||||||| |||   |||||||||||    
T  11587233 tatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgaggaatcgtttacctacgaaagaaaatttggcaaa 11587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 8361207 - 8361126
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttaccta 129  Q
    |||||||| ||| |||||||||||||||||||  | ||||| |||||||||| ||||||||| |||||| |||| |||||||    
T  8361207 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgactgctgaggaatcgtttaccta 8361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 20002832 - 20002750
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||| | | ||||| |||||| |||||||||| ||  |||||||||| ||||||||    
T  20002832 aatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcggctgttgagggatcgtttacctac 20002750  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 159842 - 159897
Alignment:
Q  166 tggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctcatttg 221  Q
    ||||||| || ||||| ||| ||||||||||||||||||| |||||| ||||||||    
T  159842 tggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttg 159897  T

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Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 12734240 - 12734059
Alignment:
Q  40 tacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 139  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  140 tttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtgggattgtcgatgatgtttctcatttg 221  Q
    ||||| ||  ||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttg 12734059  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 2553775 - 2553594
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  |||||||||||| ||||||||| ||  | |||||| || ||| |||||||||||||||||||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtggga 2553594  T

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Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 18651236 - 18651417
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||| | || |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    ||||||||||||||||||  |||||||| ||| ||||| ||| ||  | |||| | |||||| ||||| |||||||| ||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcggga 18651417  T

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Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 24767426 - 24767595
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||| ||||||| |||||||||||||| |||||||| |||    
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgttt 186  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||  | |||||| |||||| |||||||    
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgttt 24767595  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 21168337 - 21168220
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||       
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaa 21168238  T
Q  117 gatcggttacctacaaaa 134  Q
    ||||| ||||||||||||    
T  21168237 gatcgattacctacaaaa 21168220  T

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Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 17579114 - 17579210
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  17579114 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17579210  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 17573688 - 17573784
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttgg 144  Q
    |||||||| ||| |||||||||||||||||||| | ||||  ||||||||||||||||||||  |||||||||| |||||||| |||  ||||||||    
T  17573688 aatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 17573784  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 17606367 - 17606449
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    |||||||| ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||  ||||||||    
T  17606367 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 21630140 - 21630226
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 134  Q
    |||||||| ||| |||||||||| ||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||||||    
T  21630140 aatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagggatcgtttacctacaaaa 21630226  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 14373026 - 14373163
Alignment:
Q  50 tatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaat 149  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||||||||  ||| ||||| |  | |||||||| |||   |||||||||||     
T  14373026 tatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgaggaacggcttacctacgaaaggaaatttggcaaac 14373125  T
Q  150 cgtggcattctatatgtggaggagcggttatgtgtttc 187  Q
    ||||||||| | | | |||||| |||||| ||||||||    
T  14373126 cgtggcattatttctatggaggggcggttgtgtgtttc 14373163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 10577282 - 10577364
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctac 130  Q
    ||||| || ||| |||||||||||||||||||| | ||||| | ||||||||||||||||||  |||||||||| ||||||||    
T  10577282 aatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 10577364  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 15958861 - 15958946
Alignment:
Q  63 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaa 148  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||  |||||||| |||   |||||||||||    
T  15958861 tggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctacgaaagcaaatttggcaaa 15958946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 20883066 - 20883215
Alignment:
Q  48 aatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaa 147  Q
    |||||||| ||| | ||||||||| |||||||| | ||||| ||||||||||||||||| ||  |||||||| | |||||||| |||   || |||| |     
T  20883066 aatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtag 20883165  T
Q  148 atcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggg 197  Q
    ||||||||||| ||| ||||||||  ||||| |||||  | |||||||||    
T  20883166 atcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtggg 20883215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 13937817 - 13937708
Alignment:
Q  38 gttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaactt 137  Q
    |||||| || |||||||| ||  ||||||| |||||||| ||| | ||||| |||||  ||||||||||  | |||||||| ||||||||||| ||||      
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  138 aatttggcaa 147  Q
    ||||||||||    
T  13937717 aatttggcaa 13937708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 3390 - 3209
Alignment:
Q  17 gacatcataggagcagccccagttacaccataatatggacttagtttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 116  Q
    ||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||     
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  117 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatatgtggaggagcggttatgtgtttctggatgtggga 198  Q
    |||||||||||||| |||   ||||||||||| | ||||||| ||  | |||||| |||||| |||||||||||||||||||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtggga 3209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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