View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_309 (Length: 250)
Name: NF11982A_low_309
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_309 |
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Alignment Details
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 6182369 - 6182482
Alignment:
| Q |
38 |
aatgaaagatagaaattgtcacaatttttaaacttaaaataaaaatatggatgatcacgaacatattaccagaaaatataatgtttgaagcgagttcttt |
137 |
Q |
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| T |
6182369 |
aatgaaagatagaaattgtcacaatttttatatttcaac-aaaaacatggatgatcaccaacatattatcagaaattataatattcgaagtgagttcaat |
6182467 |
T |
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| Q |
138 |
gaagaagcatgggat |
152 |
Q |
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|||||| |||||||| |
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| T |
6182468 |
gaagaaacatgggat |
6182482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 6249182 - 6249226
Alignment:
| Q |
38 |
aatgaaagatagaaattgtcacaatttttaaacttaaaataaaaa |
82 |
Q |
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| T |
6249182 |
aatgaaagatagaaattgtcacaatttttaaatttaaaaaaaaaa |
6249226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 6209497 - 6209530
Alignment:
| Q |
36 |
tcaatgaaagatagaaattgtcacaatttttaaa |
69 |
Q |
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| T |
6209497 |
tcaatgaaagatagaaattgtcacaatttttaaa |
6209530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 6238810 - 6238843
Alignment:
| Q |
36 |
tcaatgaaagatagaaattgtcacaatttttaaa |
69 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6238810 |
tcaatgaaagatagaaattgtcacaatttttaaa |
6238843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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