View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_311 (Length: 250)
Name: NF11982A_low_311
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_311 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 31621365 - 31621586
Alignment:
| Q |
14 |
acttgatgtctgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcatcgcacatacatgtcggaatattgatgattgagattat |
113 |
Q |
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| T |
31621365 |
acttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgatgaagatcat |
31621464 |
T |
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| Q |
114 |
cagaatggtgaaggagaaaaatgaaataataatggaagaagatggataatgaggcagaggtttcatttttgccactagaccaaagatgaaatagttggac |
213 |
Q |
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| T |
31621465 |
caaaatggtgaaggagaaaaatgaaataataatggaagaagatggataatgaagcagaggtttcatttttgccactagaccaaagatgaaatagtgggac |
31621564 |
T |
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| Q |
214 |
aagtgtgaataatatgattgat |
235 |
Q |
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| T |
31621565 |
aagtgtgaataatatgattgat |
31621586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 31636360 - 31636450
Alignment:
| Q |
14 |
acttgatgtctgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcatcgcacatacatgtcggaatattgatgat |
104 |
Q |
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| T |
31636360 |
acttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgttggaatattgatgat |
31636450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 31606764 - 31606900
Alignment:
| Q |
75 |
atcgcacatacatgtcggaatattgatgattgagattatcagaatggtgaaggagaaaaatgaaataataatggaagaagatggataatgaggcagaggt |
174 |
Q |
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| T |
31606764 |
atcgcacaaacaagttgggatattgatgattgagattatcaaaagggtgaaggagaaaaaggaaataataatggaagaagatggatgatgaagcataggt |
31606863 |
T |
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| Q |
175 |
ttcatttttgc---cactagaccaaagatgaaatagt |
208 |
Q |
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| T |
31606864 |
ttcattctttcttgcactagaccaaagaagtaatagt |
31606900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 31616686 - 31616845
Alignment:
| Q |
72 |
atcatcgcacatacatgtcggaatattgatgattgagattatcagaatggtgaaggagaaaaatgaaataataatggaagaagatggataatgaggcaga |
171 |
Q |
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| T |
31616686 |
atcatcacacatacacgttggaatattgatgattgagatcaacaaaagggtgaaggagaataaggaaataataatggaagaagatggatgatgaagtaga |
31616785 |
T |
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| Q |
172 |
-ggtttcatttttgc---cactagaccaaagatgaaatagttggacaagtgtgaataata |
227 |
Q |
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| T |
31616786 |
gggtttcattctttcttgcgctagaccaaagaagtaatagtggaacaagtgtaaataata |
31616845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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