View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_313 (Length: 250)

Name: NF11982A_low_313
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_313
NF11982A_low_313
[»] chr1 (3 HSPs)
chr1 (102-243)||(24197649-24197789)
chr1 (7-74)||(24197467-24197534)
chr1 (192-243)||(17633331-17633382)
[»] chr6 (2 HSPs)
chr6 (96-241)||(4918881-4919030)
chr6 (177-240)||(10744195-10744258)
[»] chr8 (1 HSPs)
chr8 (100-171)||(8021336-8021408)
[»] chr3 (3 HSPs)
chr3 (182-234)||(38373546-38373598)
chr3 (193-243)||(49757685-49757735)
chr3 (180-228)||(3942072-3942120)
[»] chr2 (1 HSPs)
chr2 (192-243)||(33202438-33202489)
[»] chr5 (1 HSPs)
chr5 (167-241)||(28868792-28868866)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 24197649 - 24197789
Alignment:
Q  102 gactttggagtagtgtattacaatcacaa-ctacatgcacaaaccactaacatattttgaaaagagtacatatttgttccattcctcattaattaaatat 200  Q
    ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||  |||||||||    
T  24197649 gacttcggagttgtgaattacaatcacaaacaacatgcacaaaccactaacat--tttgaaaagagtacatatttgttctattccgcatgtattaaatat 24197746  T
Q  201 gacttttgaggtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||    
T  24197747 gacttatgaagtcatatatttcaattacaaacaataacaccaa 24197789  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 24197467 - 24197534
Alignment:
Q  7 acaatttccatgaatcaatttcaaggagaatcatttcagaaacctatcaaaccttggtgaatgcatgc 74  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||| |||||    
T  24197467 acaatttccatgaatcaatttcaaggagaatcatttcacaaatctatcaaaccatggttaatccatgc 24197534  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 17633331 - 17633382
Alignment:
Q  192 attaaatatgacttttgaggtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||||||| |||||||  ||||| |||||||||||||||||| ||||||||    
T  17633331 attaaatattacttttggagtcatgtatttcaatcacaaacaacaacaccaa 17633382  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 4918881 - 4919030
Alignment:
Q  96 aaatatgactttggagtagtgtattacaatcacaa----ctacatgcacaaaccactaacatattttgaaaagagtacatatttgttccattcctcatta 191  Q
    |||| ||||||||||||| |||||| |||||||||    ||| |||||||||||||| | |||| ||  | | | ||||||| | |  ||||||||||      
T  4918881 aaatctgactttggagtaatgtatttcaatcacaaactactatatgcacaaaccactcatatatcttacatataatacatatctatctcattcctcatgt 4918980  T
Q  192 attaaatatgacttttgaggtcatatatttcaatcacaaacaataacacc 241  Q
    ||||||||||||||||||  |||| ||||||||| | |||||| ||||||    
T  4918981 attaaatatgacttttgaaatcatgtatttcaattagaaacaacaacacc 4919030  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 10744258 - 10744195
Alignment:
Q  177 ttccattcctcattaattaaatatgacttttgaggtcatatatttcaatcacaaacaataacac 240  Q
    ||||||| ||||| ||||||| |||||| |||  |||||  |||||||||||||||||||||||    
T  10744258 ttccatttctcatgaattaaacatgactcttggagtcatgcatttcaatcacaaacaataacac 10744195  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 8021408 - 8021336
Alignment:
Q  100 atgactttggagtagtgtattacaatcac-aactacatgcacaaaccactaacatattttgaaaagagtacat 171  Q
    |||||||||||||| |||||| ||||||| ||||| |||||| ||||||||| |||||| | ||||| |||||    
T  8021408 atgactttggagtaatgtatttcaatcacaaactatatgcactaaccactaatatatttggcaaagaatacat 8021336  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 38373546 - 38373598
Alignment:
Q  182 ttcctcattaattaaatatgacttttgaggtcatatatttcaatcacaaacaa 234  Q
    |||||||| ||||||| |||||| |||| |||||| |||||||||||||||||    
T  38373546 ttcctcatgaattaaacatgactcttgaagtcatacatttcaatcacaaacaa 38373598  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 49757685 - 49757735
Alignment:
Q  193 ttaaatatgacttttgaggtcatatatttcaatcacaaacaataacaccaa 243  Q
    ||||||||||||| ||| ||||| |||||||||||||||||| || |||||    
T  49757685 ttaaatatgacttctgaagtcatgtatttcaatcacaaacaacaaaaccaa 49757735  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 3942072 - 3942120
Alignment:
Q  180 cattcctcattaattaaatatgacttttgaggtcatatatttcaatcac 228  Q
    ||||||||||  ||||||||||| |||||| ||||| ||||||||||||    
T  3942072 cattcctcatgtattaaatatgatttttgaagtcatgtatttcaatcac 3942120  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 33202489 - 33202438
Alignment:
Q  192 attaaatatgacttttgaggtcatatatttcaatcacaaacaataacaccaa 243  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||  |||||||    
T  33202489 attaaatatgacttttgaagtcatttattttaatcacaaacaacgacaccaa 33202438  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 28868866 - 28868792
Alignment:
Q  167 tacatatttgttccattcctcattaattaaatatgacttttgaggtcatatatttcaatcacaaacaataacacc 241  Q
    |||||||||||  ||||| ||||  |||||||||| ||| || |||||| ||||||||| |||||||| ||||||    
T  28868866 tacatatttgtcacattcttcatgtattaaatatggcttatggggtcatgtatttcaattacaaacaacaacacc 28868792  T

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