View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_328 (Length: 248)

Name: NF11982A_low_328
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_328
NF11982A_low_328
[»] chr6 (5 HSPs)
chr6 (36-248)||(25988481-25988693)
chr6 (51-133)||(25320891-25320973)
chr6 (51-133)||(26150584-26150666)
chr6 (181-248)||(25320975-25321042)
chr6 (181-248)||(26150668-26150735)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 25988481 - 25988693
Alignment:
Q  36 atccttgtttgtcttagtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtctat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988481 atccttgtttgtcttagtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtctat 25988580  T
Q  136 aatggacatccaatgtgcttccttacttatcgctatttgcggttagcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagctt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25988581 aatggacatccaatgtgcttccttacttatcgctatttgcggttagcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagctt 25988680  T
Q  236 caactaagtctga 248  Q
    |||||||||||||    
T  25988681 caactaagtctga 25988693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 25320891 - 25320973
Alignment:
Q  51 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25320891 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 25320973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 26150584 - 26150666
Alignment:
Q  51 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26150584 agtttcctttgttgaggggttcgtagctccccattctcggttaccaactttccacttcacgacattatttgttaagaaggtct 26150666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 25320975 - 25321042
Alignment:
Q  181 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagcttcaactaagtctga 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25320975 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaacttgagcttcaactaagtctga 25321042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 26150668 - 26150735
Alignment:
Q  181 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaactcgagcttcaactaagtctga 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26150668 gcgccactataaatagggagtgtgagtttagtgcctcattgtccaacttgagcttcaactaagtctga 26150735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University