View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_329 (Length: 248)

Name: NF11982A_low_329
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_329
NF11982A_low_329
[»] chr4 (1 HSPs)
chr4 (54-125)||(11122301-11122373)
[»] chr8 (4 HSPs)
chr8 (181-219)||(25874441-25874479)
chr8 (182-238)||(13639410-13639468)
chr8 (182-238)||(13739823-13739881)
chr8 (176-218)||(33462664-33462706)
[»] chr6 (1 HSPs)
chr6 (187-239)||(30732381-30732431)
[»] chr7 (1 HSPs)
chr7 (191-238)||(31627380-31627426)
[»] chr5 (1 HSPs)
chr5 (182-217)||(42069781-42069816)
[»] chr2 (3 HSPs)
chr2 (180-215)||(11182243-11182278)
chr2 (180-214)||(34644651-34644685)
chr2 (135-227)||(14803065-14803158)
[»] chr1 (4 HSPs)
chr1 (182-221)||(5950919-5950958)
chr1 (136-215)||(35790359-35790435)
chr1 (182-217)||(46742304-46742339)
chr1 (187-239)||(48781406-48781458)
[»] chr3 (2 HSPs)
chr3 (187-215)||(653272-653300)
chr3 (180-216)||(29384250-29384286)


Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 11122373 - 11122301
Alignment:
Q  54 aagttcaaagggtcttgctcagagcataatattgttt-actgccaaaaacaacctcttgtcactgttttaaat 125  Q
    ||||||||||||||||||||| || | |||||||||| ||| || ||||||||||||||||||| ||||||||    
T  11122373 aagttcaaagggtcttgctcataggagaatattgttttactacctaaaacaacctcttgtcactattttaaat 11122301  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 25874479 - 25874441
Alignment:
Q  181 tatcatatacatcaattattcaataaatttaaaaaatag 219  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  25874479 tatcatatacatcaattattcaataaatttataaaatag 25874441  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 13639410 - 13639468
Alignment:
Q  182 atcatatacatcaattattcaataaatttaaaaaatag--ttcttttttgcttataata 238  Q
    |||| |||||||||||||||||||||| |||||| |||  || ||||||||||||||||    
T  13639410 atcagatacatcaattattcaataaatctaaaaattagattttttttttgcttataata 13639468  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 13739823 - 13739881
Alignment:
Q  182 atcatatacatcaattattcaataaatttaaaaaatag--ttcttttttgcttataata 238  Q
    |||| |||||||||||||||||||||| |||||| |||  || ||||||||||||||||    
T  13739823 atcagatacatcaattattcaataaatctaaaaattagattttttttttgcttataata 13739881  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 33462664 - 33462706
Alignment:
Q  176 atacatatcatatacatcaattattcaataaatttaaaaaata 218  Q
    |||||||||||||||||| |||||||||||||| || ||||||    
T  33462664 atacatatcatatacatcgattattcaataaatatagaaaata 33462706  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 30732431 - 30732381
Alignment:
Q  187 atacatcaattattcaataaatttaaaaaatagttcttttttgcttataataa 239  Q
    ||||||||||||||||||||| ||||||||||||  ||||||| |||||||||    
T  30732431 atacatcaattattcaataaacttaaaaaatagt--ttttttgtttataataa 30732381  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 31627380 - 31627426
Alignment:
Q  191 atcaattattcaataaatttaaaaaatagttcttttttgcttataata 238  Q
    |||||||||||||||||||||||||||| || |||||| |||||||||    
T  31627380 atcaattattcaataaatttaaaaaataatt-tttttttcttataata 31627426  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 42069816 - 42069781
Alignment:
Q  182 atcatatacatcaattattcaataaatttaaaaaat 217  Q
    |||| |||||||||||||||||||||||||||||||    
T  42069816 atcaaatacatcaattattcaataaatttaaaaaat 42069781  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 11182243 - 11182278
Alignment:
Q  180 atatcatatacatcaattattcaataaatttaaaaa 215  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11182243 atatcatatacatcaattactcaataaatttaaaaa 11182278  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 34644685 - 34644651
Alignment:
Q  180 atatcatatacatcaattattcaataaatttaaaa 214  Q
    ||||||||||||||| |||||||||||||||||||    
T  34644685 atatcatatacatcatttattcaataaatttaaaa 34644651  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 14803065 - 14803158
Alignment:
Q  135 tattgtttagatttatcgaataatttatgtatctgatttcta-tacatatcatatacatcaattattcaataaatttaaaaaatagttcttttt 227  Q
    |||| ||||||||||| |||||||| |||||| |||| | || || | |||| |||||||||||||| | ||||| |||||||| ||| |||||    
T  14803065 tattttttagatttatagaataattgatgtatttgatctataatatagatcaaatacatcaattattaattaaatctaaaaaattgtttttttt 14803158  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 5950919 - 5950958
Alignment:
Q  182 atcatatacatcaattattcaataaatttaaaaaatagtt 221  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  5950919 atcaaatacattaattattcaataaatttaaaaaatagtt 5950958  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 35790435 - 35790359
Alignment:
Q  136 attgtttagatttatcgaataatttatgtatctgatttctat-acatatcatatacatcaattattcaataaatttaaaaa 215  Q
    ||||||||||||||| |||||||    |||||||| || ||| | |||||| |||||||||||||||||| ||||||||||    
T  35790435 attgtttagatttattgaataat----gtatctgacttatatcatatatcaaatacatcaattattcaatgaatttaaaaa 35790359  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 46742304 - 46742339
Alignment:
Q  182 atcatatacatcaattattcaataaatttaaaaaat 217  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46742304 atcatatacatcaattatttaataaatttaaaaaat 46742339  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 48781406 - 48781458
Alignment:
Q  187 atacatcaattattcaataaatttaaaaaatagttcttttttgcttataataa 239  Q
    |||| ||||||||||| ||||| |||||||||||| | |||| ||||||||||    
T  48781406 atacttcaattattcattaaatctaaaaaatagttttctttttcttataataa 48781458  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 653300 - 653272
Alignment:
Q  187 atacatcaattattcaataaatttaaaaa 215  Q
    |||||||||||||||||||||||||||||    
T  653300 atacatcaattattcaataaatttaaaaa 653272  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 29384286 - 29384250
Alignment:
Q  180 atatcatatacatcaattattcaataaatttaaaaaa 216  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29384286 atatcaaatacatcaattatttaataaatttaaaaaa 29384250  T

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