View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_33 (Length: 422)

Name: NF11982A_low_33
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_33
NF11982A_low_33
[»] chr8 (7 HSPs)
chr8 (12-422)||(10562557-10562967)
chr8 (295-367)||(30966065-30966141)
chr8 (325-367)||(7267497-7267539)
chr8 (326-367)||(6559482-6559523)
chr8 (326-367)||(11232227-11232268)
chr8 (326-367)||(11232462-11232503)
chr8 (326-367)||(24532454-24532495)
[»] chr6 (3 HSPs)
chr6 (326-367)||(6542976-6543017)
chr6 (326-367)||(13353211-13353252)
chr6 (326-367)||(33796336-33796377)
[»] chr2 (3 HSPs)
chr2 (326-367)||(5711708-5711749)
chr2 (325-367)||(93155-93197)
chr2 (326-367)||(36352192-36352233)
[»] chr1 (3 HSPs)
chr1 (330-385)||(25460731-25460786)
chr1 (326-367)||(26173257-26173298)
chr1 (326-367)||(38668370-38668411)
[»] chr7 (3 HSPs)
chr7 (325-367)||(1596838-1596880)
chr7 (326-367)||(29469615-29469656)
chr7 (326-367)||(29469850-29469891)
[»] chr3 (1 HSPs)
chr3 (326-368)||(30326915-30326957)
[»] scaffold0519 (2 HSPs)
scaffold0519 (326-367)||(1926-1967)
scaffold0519 (326-367)||(2161-2202)
[»] chr5 (4 HSPs)
chr5 (326-367)||(170584-170625)
chr5 (326-367)||(7369734-7369775)
chr5 (326-367)||(17352468-17352509)
chr5 (326-367)||(19705913-19705954)
[»] chr4 (2 HSPs)
chr4 (326-367)||(12869062-12869103)
chr4 (326-367)||(52559577-52559618)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 10562967 - 10562557
Alignment:
Q  12 tgttgaatggagaaacatttgtataatgtctctgatttattgtattgaagctttaatgtatttcttttgaaatgttgattgttactctgtgccttcagtc 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10562967 tgttgaatggagaaacctttgtataatgtctctgatttattgtattgaagctttaatgtctttcttttgaaatgttgattgttactctgtgccttcagtc 10562868  T
Q  112 accatctgctagtaccataagaaggcatgtcatcgcatcacttgttcagcgctatagatcagtcggtagaaatgaatgcgctctaccgcctgcatctcct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  10562867 accatctgctagtaccataagaaggcatgtcatcgcatcacttgttcagcgctatagatcagtcggtaaaaatgcatgtgctctaccgcctgcatctcct 10562768  T
Q  212 ggctacaataactcagttgaagtaagcatatttttgtacagtgaaacttttaccagttctatatcacattctccttgttcaaaactattagaatttgggt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10562767 ggctacaataactcagttgaagtaagcatatttttgtacagtgaaacttttacctgttctatatcacattctccttgttcaaaactattagaatttgggt 10562668  T
Q  312 tgagcctaacgcatacaaaaccggcttctaaggtgatgactgcccccacttataaagtcacgctcgtaccttatttcattcgaggtgatgcactataagc 411  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10562667 tgagcctaatgcatacaaaatcggcttctaaggtgatgactgcccccacttataaagtcatgctcgtaccttatttcattcgaggtgatgcgctataagc 10562568  T
Q  412 tagtgtctggc 422  Q
    |||||||||||    
T  10562567 tagtgtctggc 10562557  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 30966065 - 30966141
Alignment:
Q  295 actattagaatttgggttgagcctaacgca----tacaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||||||||| ||||||| ||    |||||||||||||| |||||||| |||||||||||||||||||    
T  30966065 actattagaatttgggttgggcctaactcaaatttacaaaaccggcttgtaaggtgaggactgcccccacttataaa 30966141  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 7267497 - 7267539
Alignment:
Q  325 tacaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    |||||||||||||| | ||||||||| ||||||||||||||||    
T  7267497 tacaaaaccggcttgtgaggtgatgattgcccccacttataaa 7267539  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 6559482 - 6559523
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  6559482 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 6559523  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 11232227 - 11232268
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  11232227 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 11232268  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 11232462 - 11232503
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  11232462 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 11232503  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 24532454 - 24532495
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  24532454 acaaaaccggcttgtgaggtgatgattgcccccacttataaa 24532495  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 6542976 - 6543017
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  6542976 acaaaaccggcttctgaggtgatgattgcccccacttataaa 6543017  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 13353252 - 13353211
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  13353252 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 13353211  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 33796377 - 33796336
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  33796377 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 33796336  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 5711708 - 5711749
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  5711708 acaaaaccggcttttaaggtgatgattgcccccacttataaa 5711749  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 93155 - 93197
Alignment:
Q  325 tacaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    |||||||||||||| |||||||| || ||||||||||||||||    
T  93155 tacaaaaccggcttgtaaggtgaggagtgcccccacttataaa 93197  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 36352192 - 36352233
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  36352192 acaaaaccggcttttgaggtgatgattgcccccacttataaa 36352233  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 25460731 - 25460786
Alignment:
Q  330 aaccggcttctaaggtgatgactgcccccacttataaagtcacgctcgtaccttat 385  Q
    ||||||||| |||||||| || |||||||||||||||||||| ||||  |||||||    
T  25460731 aaccggcttgtaaggtgaggattgcccccacttataaagtcatgctcagaccttat 25460786  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 26173257 - 26173298
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  26173257 acaaaaccggcttgtgaggtgatgattgcccccacttataaa 26173298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 38668411 - 38668370
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||    
T  38668411 acaaaaccgacttgtaaggtgatgattgcccccacttataaa 38668370  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Complemental strand, 1596880 - 1596838
Alignment:
Q  325 tacaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    |||||||||||||| |||||||| || ||||||||||||||||    
T  1596880 tacaaaaccggcttgtaaggtgaggattgcccccacttataaa 1596838  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 29469656 - 29469615
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  29469656 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 29469615  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 29469891 - 29469850
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  29469891 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 29469850  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 30326957 - 30326915
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaag 368  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||    
T  30326957 acaaaaccggcttgtaaggtgaggactgcccccaattataaag 30326915  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 1967 - 1926
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  1967 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 1926  T

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Target: scaffold0519; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 2202 - 2161
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  2202 acaaaaccggcttgtaaggtgaggattgcccccacttataaa 2161  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 170584 - 170625
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  170584 acaaaaccggcttgtgaggtgaggactgcccccacttataaa 170625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 7369775 - 7369734
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  7369775 acaaaaccggcttgtgaggtgaggactgcccccacttataaa 7369734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 17352468 - 17352509
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  17352468 acaaaaccggcttgtgaggtgatgattgcccccacttataaa 17352509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 19705954 - 19705913
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  19705954 acaaaaccggcttataaggtgaggattgcccccacttataaa 19705913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 12869062 - 12869103
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  12869062 acaaaaccggcttgtgaggtgatgattgcccccacttataaa 12869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 52559618 - 52559577
Alignment:
Q  326 acaaaaccggcttctaaggtgatgactgcccccacttataaa 367  Q
    ||||||||||||| | ||||||||| ||||||||||||||||    
T  52559618 acaaaaccggcttgtgaggtgatgattgcccccacttataaa 52559577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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