View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_330 (Length: 248)

Name: NF11982A_low_330
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_330
NF11982A_low_330
[»] chr8 (15 HSPs)
chr8 (9-69)||(6573843-6573906)
chr8 (9-68)||(22207407-22207469)
chr8 (9-68)||(18815699-18815761)
chr8 (9-68)||(18819619-18819681)
chr8 (187-242)||(6574028-6574083)
chr8 (9-69)||(36405810-36405873)
chr8 (9-68)||(17979242-17979304)
chr8 (9-68)||(36733392-36733454)
chr8 (27-69)||(38988525-38988567)
chr8 (27-69)||(39019622-39019664)
chr8 (27-68)||(21513505-21513546)
chr8 (35-68)||(22473761-22473794)
chr8 (188-242)||(5079974-5080027)
chr8 (27-55)||(4381513-4381541)
chr8 (157-185)||(6573985-6574013)
[»] scaffold0462 (2 HSPs)
scaffold0462 (9-68)||(559-621)
scaffold0462 (9-68)||(6065-6127)
[»] scaffold0051 (2 HSPs)
scaffold0051 (9-68)||(64793-64855)
scaffold0051 (187-242)||(64996-65051)
[»] chr7 (11 HSPs)
chr7 (9-68)||(15120072-15120134)
chr7 (35-69)||(48213752-48213786)
chr7 (35-68)||(15576839-15576872)
chr7 (35-68)||(16251326-16251359)
chr7 (34-63)||(20253388-20253417)
chr7 (35-68)||(24270647-24270680)
chr7 (36-68)||(4691653-4691685)
chr7 (187-242)||(11314153-11314209)
chr7 (187-242)||(13746011-13746067)
chr7 (187-242)||(13746099-13746155)
chr7 (27-55)||(14153712-14153740)
[»] chr3 (13 HSPs)
chr3 (9-68)||(17044242-17044304)
chr3 (9-68)||(53646721-53646783)
chr3 (10-69)||(15565749-15565811)
chr3 (10-68)||(24545824-24545885)
chr3 (9-69)||(17207375-17207438)
chr3 (9-68)||(1208760-1208822)
chr3 (192-242)||(53646911-53646961)
chr3 (36-68)||(22842454-22842486)
chr3 (36-68)||(45804244-45804276)
chr3 (36-68)||(50351914-50351946)
chr3 (186-242)||(12540318-12540375)
chr3 (35-68)||(12540517-12540550)
chr3 (35-68)||(14519528-14519561)
[»] chr2 (12 HSPs)
chr2 (9-68)||(25085645-25085707)
chr2 (9-66)||(21336505-21336565)
chr2 (27-68)||(21316633-21316674)
chr2 (187-242)||(45679461-45679516)
chr2 (35-68)||(1384556-1384589)
chr2 (187-231)||(25085472-25085516)
chr2 (187-242)||(45679504-45679560)
chr2 (33-68)||(37379525-37379560)
chr2 (36-66)||(25587561-25587591)
chr2 (186-242)||(22685722-22685779)
chr2 (157-185)||(25085531-25085559)
chr2 (187-242)||(45679394-45679450)
[»] chr5 (16 HSPs)
chr5 (9-68)||(8833985-8834047)
chr5 (9-66)||(26761669-26761729)
chr5 (27-68)||(20198555-20198596)
chr5 (9-68)||(1628259-1628321)
chr5 (9-68)||(14026696-14026758)
chr5 (33-69)||(16605267-16605303)
chr5 (10-68)||(660158-660219)
chr5 (27-69)||(16062617-16062659)
chr5 (35-68)||(22110953-22110986)
chr5 (187-242)||(16062434-16062490)
chr5 (9-68)||(18743774-18743836)
chr5 (32-68)||(19076444-19076480)
chr5 (187-242)||(21401940-21401996)
chr5 (35-68)||(21401798-21401831)
chr5 (157-185)||(8834136-8834164)
chr5 (9-52)||(26749243-26749289)
[»] chr1 (12 HSPs)
chr1 (9-68)||(50543827-50543889)
chr1 (27-68)||(6833442-6833483)
chr1 (27-68)||(7321697-7321738)
chr1 (9-69)||(14793249-14793312)
chr1 (10-68)||(28477534-28477595)
chr1 (35-69)||(25262989-25263023)
chr1 (187-232)||(6833209-6833254)
chr1 (35-68)||(17903843-17903876)
chr1 (27-68)||(24720603-24720644)
chr1 (35-68)||(45496202-45496235)
chr1 (38-69)||(39060318-39060349)
chr1 (35-68)||(12710093-12710126)
[»] scaffold0032 (1 HSPs)
scaffold0032 (10-68)||(62914-62975)
[»] scaffold0203 (1 HSPs)
scaffold0203 (27-68)||(19014-19055)
[»] scaffold0125 (2 HSPs)
scaffold0125 (27-68)||(27523-27564)
scaffold0125 (187-231)||(27307-27352)
[»] scaffold0004 (4 HSPs)
scaffold0004 (27-68)||(66917-66958)
scaffold0004 (187-242)||(67177-67232)
scaffold0004 (187-242)||(67220-67275)
scaffold0004 (186-242)||(67131-67189)
[»] chr4 (11 HSPs)
chr4 (27-68)||(12622611-12622652)
chr4 (10-68)||(19566745-19566806)
chr4 (36-68)||(25512708-25512740)
chr4 (36-68)||(55582410-55582442)
chr4 (33-68)||(37838746-37838781)
chr4 (33-68)||(42597475-42597510)
chr4 (27-68)||(46740311-46740352)
chr4 (33-65)||(15242295-15242327)
chr4 (187-227)||(44024489-44024529)
chr4 (9-68)||(45315099-45315160)
chr4 (187-242)||(45315285-45315341)
[»] scaffold0577 (1 HSPs)
scaffold0577 (35-69)||(7915-7949)
[»] chr6 (6 HSPs)
chr6 (27-65)||(29044429-29044467)
chr6 (35-68)||(19957753-19957786)
chr6 (32-68)||(21686555-21686591)
chr6 (9-68)||(22556371-22556433)
chr6 (35-68)||(19234550-19234583)
chr6 (27-60)||(21680707-21680740)
[»] scaffold1256 (1 HSPs)
scaffold1256 (10-66)||(193-252)
[»] scaffold0628 (2 HSPs)
scaffold0628 (35-68)||(4368-4401)
scaffold0628 (35-68)||(8928-8961)
[»] scaffold0505 (2 HSPs)
scaffold0505 (35-68)||(1878-1911)
scaffold0505 (35-68)||(3898-3931)
[»] scaffold0108 (1 HSPs)
scaffold0108 (35-68)||(7728-7761)
[»] scaffold0174 (2 HSPs)
scaffold0174 (187-242)||(15054-15110)
scaffold0174 (187-242)||(15010-15066)
[»] scaffold0123 (1 HSPs)
scaffold0123 (9-66)||(16178-16239)
[»] scaffold0230 (4 HSPs)
scaffold0230 (35-66)||(7610-7641)
scaffold0230 (189-242)||(7807-7861)
scaffold0230 (186-242)||(7892-7949)
scaffold0230 (187-232)||(7937-7982)
[»] scaffold0371 (2 HSPs)
scaffold0371 (30-68)||(11132-11170)
scaffold0371 (157-185)||(11250-11278)
[»] scaffold0231 (1 HSPs)
scaffold0231 (38-68)||(18590-18620)
[»] scaffold0213 (1 HSPs)
scaffold0213 (27-60)||(18296-18329)
[»] scaffold0059 (1 HSPs)
scaffold0059 (35-68)||(49209-49242)
[»] scaffold0056 (4 HSPs)
scaffold0056 (187-232)||(15379-15424)
scaffold0056 (187-243)||(15587-15644)
scaffold0056 (187-231)||(15643-15688)
scaffold0056 (27-68)||(15819-15860)
[»] scaffold0401 (1 HSPs)
scaffold0401 (187-227)||(7906-7946)
[»] scaffold0063 (1 HSPs)
scaffold0063 (9-60)||(61966-62020)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 6573843 - 6573906
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  6573843 gaatatgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaagtcgtc 6573906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 22207469 - 22207407
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  22207469 gaatgtgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaagtcgt 22207407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 18815699 - 18815761
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   | ||||||||||||||||||||||||||||||||||||    
T  18815699 gaatatgatgttacatgatgttgttcgtaattgatgaattatgatattatgatgcaaagtcgt 18815761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 18819619 - 18819681
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   ||||| ||||||||||||||||||||||||||||||||    
T  18819619 gaatatgatgttacatgatgttgttcataactgatgaattatgatattatgatgcaaagtcgt 18819681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 6574028 - 6574083
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    ||||||||||||||||||||||||||  ||||  ||||||||||||||||||||||    
T  6574028 tggaatgtataatcattcatttaaagttgaggacttgatgctctgaaatttataat 6574083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 36405810 - 36405873
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||| |||||||   ||||||| |||||||||||||||||||||| ||||||||    
T  36405810 gaatatgatgttacatgatgttgttcataattaatgaattatgatattatgatgcgaagtcgtc 36405873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 17979242 - 17979304
Alignment:
Q  9 gaatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||    ||||||||||||||||||||||||||||| |||||||    
T  17979242 gaatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcgaagtcgt 17979304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 36733392 - 36733454
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   |||||| |||||||||||||||||||||||||| ||||    
T  36733392 gaatatgatgttacatgatgttgttcataatagatgaattatgatattatgatgcaaattcgt 36733454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 38988567 - 38988525
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  38988567 tgtttataattgatgaattatgatattatgatgcgaagtcgtc 38988525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 39019664 - 39019622
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  39019664 tgtttataattgatgaattatgatattatgatgcgaagtcgtc 39019622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 21513546 - 21513505
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  21513546 tgtttataattgatgaattatgatattatgatgcgaagtcgt 21513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 22473794 - 22473761
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  22473794 attgatgaattatgatattatgatgcaaagtcgt 22473761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 5080027 - 5079974
Alignment:
Q  188 ggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||| ||||||||||| |||| |||||| ||||||||||||||| ||||||    
T  5080027 ggaatgtaaaatcattcatt-aaagtagagggcttgatgctctgaaatgtataat 5079974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 4381513 - 4381541
Alignment:
Q  27 tgttcataattgatgaattatgatattat 55  Q
    |||||||||||||||||||||||||||||    
T  4381513 tgttcataattgatgaattatgatattat 4381541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 6573985 - 6574013
Alignment:
Q  157 ctgagtccatgcatactcatattaagttg 185  Q
    |||||||||||||||||||||||||||||    
T  6573985 ctgagtccatgcatactcatattaagttg 6574013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 621 - 559
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||    
T  621 gaatatgatgttacgtgatgttgttcataattgatgaattataatattatgatgcaaagtcgt 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 6127 - 6065
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||    
T  6127 gaatatgatgttacgtgatgttgttcataattgatgaattataatattatgatgcaaagtcgt 6065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 64793 - 64855
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  64793 gaatatgatgttacgtgatgttgttcattattgatgaattatgatattatgatgcaaagtcgt 64855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 64996 - 65051
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||    
T  64996 tggaatgtataatcattcatttaaagttgagggtttgatgctctggaatgtataat 65051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 15120072 - 15120134
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  15120072 gaatatgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaattcgt 15120134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 48213752 - 48213786
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||||||||||||||||||||||||    
T  48213752 attgatgaattatgatattatgatgcaaagtcgtc 48213786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 15576839 - 15576872
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  15576839 attgatgaattatgatattatgatgcaaagtcgt 15576872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 16251326 - 16251359
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||| ||||||||||||||||||||    
T  16251326 attgatgaattattatattatgatgcaaagtcgt 16251359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 20253388 - 20253417
Alignment:
Q  34 aattgatgaattatgatattatgatgcaaa 63  Q
    ||||||||||||||||||||||||||||||    
T  20253388 aattgatgaattatgatattatgatgcaaa 20253417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 24270647 - 24270680
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||| |||||||    
T  24270647 attgatgaattatgatattatgatgcgaagtcgt 24270680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 4691653 - 4691685
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||| |||||||    
T  4691653 ttgatgaattatgatattatgatgcgaagtcgt 4691685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 11314153 - 11314209
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||| ||| ||||||    
T  11314153 tggaatgtataatcattcatattaaagtagagggcttgatgttctggaatgtataat 11314209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 13746011 - 13746067
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  13746011 tggaatgtataatcattcatattaaagttgagggcttgatgctctggaatatataat 13746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 13746099 - 13746155
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  13746099 tggaatgtataatcattcatattaaagttgagggattgatgctctggaatatataat 13746155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 14153712 - 14153740
Alignment:
Q  27 tgttcataattgatgaattatgatattat 55  Q
    |||||||||||||||||||||||||||||    
T  14153712 tgttcataattgatgaattatgatattat 14153740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 17044304 - 17044242
Alignment:
Q  9 gaatatgatgttacgtga---tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||    
T  17044304 gaatatgatgttacgtgaggttgttcataattgatgaattatgatattatgatgcaaaatcgt 17044242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 53646721 - 53646783
Alignment:
Q  9 gaatatgatgttacgtgat---gttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||||    
T  53646721 gaatatgatgttacgtgatattgttcataattgatgaattataatattatgatgcaaagtcgt 53646783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 15565811 - 15565749
Alignment:
Q  10 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    ||||||||||||| |||||||    ||||||||||||||||||||||||||||||||||||||    
T  15565811 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcaaagtcgtc 15565749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 24545885 - 24545824
Alignment:
Q  10 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  24545885 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcaaagtcgt 24545824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 17207438 - 17207375
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||||||||| ||||||||    
T  17207438 gaatatgatgttacatgatgttgttcataattgatgaattatgatcttatgatgcgaagtcgtc 17207375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 1208760 - 1208822
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   |||||||||||||||||||||||||||||  |||||||    
T  1208760 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgatgtgaagtcgt 1208822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 53646911 - 53646961
Alignment:
Q  192 tgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||| ||||||    
T  53646911 tgtataatcattcatttaaagctgagggcttgatgctctggaatgtataat 53646961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 22842454 - 22842486
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||    
T  22842454 ttgatgaattatgatattatgatgcaaagtcgt 22842486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 45804244 - 45804276
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||    
T  45804244 ttgatgaattatgatattatgatgcaaagtcgt 45804276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 50351914 - 50351946
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||    
T  50351914 ttgatgaattatgatattatgatgcaaagtcgt 50351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 12540375 - 12540318
Alignment:
Q  186 ttggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  12540375 ttggaatgtataatcattcatgttaaagttgagggcttgatgctctggaatgtataat 12540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 12540550 - 12540517
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||| |||||||||||||||||||||||||||    
T  12540550 attgattaattatgatattatgatgcaaagtcgt 12540517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 14519561 - 14519528
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||| |||||||||||||||||||||||||||    
T  14519561 attgataaattatgatattatgatgcaaagtcgt 14519528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 25085707 - 25085645
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  25085707 gaatatgatgttacgtgatgttgttcataattgatgaattatgatattatgatgcaaattcgt 25085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 21336505 - 21336565
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtc 66  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||    
T  21336505 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgatgcaaagtc 21336565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 21316633 - 21316674
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  21316633 tgttcataattgattaattatgatattatgatgcaaagtcgt 21316674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 45679516 - 45679461
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| ||| ||||||    
T  45679516 tggaatgtataatcattcatttaaagttgagggcttgatgctctggaatgtataat 45679461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 1384556 - 1384589
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  1384556 attgatgaattatgatattatgatgcaaagtcgt 1384589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 25085516 - 25085472
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctg 231  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||    
T  25085516 tggaatgtataatcattcatttaaagttgagggcttgatgctctg 25085472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 45679560 - 45679504
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||| ||||||    
T  45679560 tggaatgtataatcattcatattaaagtagagggcttgatgctctggaatgtataat 45679504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 37379560 - 37379525
Alignment:
Q  33 taattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37379560 taattaatgaattatgatattatgatgcaaagtcgt 37379525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 25587561 - 25587591
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtc 66  Q
    |||||||||||||||||||||||||||||||    
T  25587561 ttgatgaattatgatattatgatgcaaagtc 25587591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 22685779 - 22685722
Alignment:
Q  186 ttggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  22685779 ttggaatgtataatcattcatattaaagttgagggcttgatgctctggaatatataat 22685722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 25085559 - 25085531
Alignment:
Q  157 ctgagtccatgcatactcatattaagttg 185  Q
    |||||||||||||||||||||||||||||    
T  25085559 ctgagtccatgcatactcatattaagttg 25085531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 45679450 - 45679394
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  45679450 tggaatgtataatcattcatattaaagttgagggcttgatgctctggaatgtataat 45679394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 8833985 - 8834047
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   |||||||||||||||||||||||||| |||||||||||    
T  8833985 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgctgcaaagtcgt 8834047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26761729 - 26761669
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtc 66  Q
    ||||||||||||||||||||||   ||||||| ||||||||| ||||||||||||||||||    
T  26761729 gaatatgatgttacgtgatgttgttcataattaatgaattatcatattatgatgcaaagtc 26761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 20198555 - 20198596
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  20198555 tgttcataattgatgaattatgatattatgatgcgaagtcgt 20198596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 1628259 - 1628321
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||| |||| |||||||    
T  1628259 gaatatgatgttacatgatgttgttcataattgatgaattatgatattataatgcgaagtcgt 1628321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 14026696 - 14026758
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||||||| || |||||||    
T  14026696 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgaagcgaagtcgt 14026758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 16605267 - 16605303
Alignment:
Q  33 taattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||||||||||||||||||||||||||    
T  16605267 taattgatgaattatgatattatgatgcaaagtcgtc 16605303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 660219 - 660158
Alignment:
Q  10 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||| |||||||    ||||||||||||||||| |||||||||||||||||||    
T  660219 aatatgatgttacatgatgttgtttataattgatgaattatggtattatgatgcaaagtcgt 660158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 16062659 - 16062617
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  16062659 tgttcatgattgatgaattataatattatgatgcaaagtcgtc 16062617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 22110986 - 22110953
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  22110986 attgatgaattatgatattatgatgcaaagtcgt 22110953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 16062490 - 16062434
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||| ||||||    
T  16062490 tggaatgtataatcattcatattaaagtagagggcttgatgctctggaatgtataat 16062434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 18743836 - 18743774
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   |||||||||| ||||||||||||||||||  |||||||    
T  18743836 gaatatgatgttacatgatgttgttcataattgataaattatgatattatgatgtgaagtcgt 18743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 19076480 - 19076444
Alignment:
Q  32 ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19076480 ataattaatgaattatgatattatgatgcaaagtcgt 19076444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 21401940 - 21401996
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||| ||| ||||||    
T  21401940 tggaatgtataatcattcatattaaagtagagggcttgatgctctggaatgtataat 21401996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 21401798 - 21401831
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||| |||||||||||||||||||||    
T  21401798 attgatgaattacgatattatgatgcaaagtcgt 21401831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 8834136 - 8834164
Alignment:
Q  157 ctgagtccatgcatactcatattaagttg 185  Q
    |||||||||||||||||||||||||||||    
T  8834136 ctgagtccatgcatactcatattaagttg 8834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 26749289 - 26749243
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatat 52  Q
    |||||||||||||| |||||||   ||||||||||||||||||||||    
T  26749289 gaatatgatgttacatgatgttgttcataattgatgaattatgatat 26749243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 50543889 - 50543827
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   |||||||||||||||||||||||||||||| |||||||    
T  50543889 gaatatgatgttacatgatgttgttcataattgatgaattatgatattatgatgcgaagtcgt 50543827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 6833483 - 6833442
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  6833483 tgttcatgattgatgaattatgatattatgatgcaaagtcgt 6833442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 7321697 - 7321738
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  7321697 tgttcataattgatgaattatgatattatgatgcgaagtcgt 7321738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 14793249 - 14793312
Alignment:
Q  9 gaatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||| |||||||    ||||||||||||||||||||||||||||| ||||||||    
T  14793249 gaatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcgaagtcgtc 14793312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 28477534 - 28477595
Alignment:
Q  10 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||| |||||||    ||||||||||||||||||||| |||||||||||||||    
T  28477534 aatatgatgttacatgatgttgtttataattgatgaattatgatatcatgatgcaaagtcgt 28477595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 25262989 - 25263023
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||||||||||||||||||||||||    
T  25262989 attgatgaattatgatattatgatgcaaagtcgtc 25263023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 6833254 - 6833209
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctga 232  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  6833254 tggaatgtataatcattcatttaaagttgagggcttgatgctctga 6833209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 17903843 - 17903876
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  17903843 attgatgaattatgatattatgatgcaaagtcgt 17903876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 24720603 - 24720644
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  24720603 tgtttataattgatgaattatgatattatgatgcgaagtcgt 24720644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 45496235 - 45496202
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  45496235 attgatgaattatgatattatgatgcaaagtcgt 45496202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 39060349 - 39060318
Alignment:
Q  38 gatgaattatgatattatgatgcaaagtcgtc 69  Q
    ||||||||||||||||||||||||||||||||    
T  39060349 gatgaattatgatattatgatgcaaagtcgtc 39060318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 12710126 - 12710093
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||| |||||||||||||||||||||    
T  12710126 attgatgaattacgatattatgatgcaaagtcgt 12710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 62914 - 62975
Alignment:
Q  10 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  62914 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcaaagtcgt 62975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 19014 - 19055
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  19014 tgtttataattgatgaattatgatattatgatgcaaagtcgt 19055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 27564 - 27523
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  27564 tgttcataattgatgaattatgatattatgattcaaagtcgt 27523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 27352 - 27307
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctg 231  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||    
T  27352 tggaatgtataatcattcatattaaagtagagggcttgatgctctg 27307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 66917 - 66958
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  66917 tgttcataattgatgaattatgatattatgatgcgaagtcgt 66958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 67177 - 67232
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||| ||| ||||||    
T  67177 tggaatgtataatcattcatataaagtagagggattgatgctctggaatgtataat 67232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 67220 - 67275
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctgaaatttataat 242  Q
    ||||||||||||||||||||||||||  || || ||||||||||||||| ||||||    
T  67220 tggaatgtataatcattcatttaaagttgatggcttgatgctctgaaatgtataat 67275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 67131 - 67189
Alignment:
Q  186 ttggaatgtataatcattcat--ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||||  |||||| |||||| ||||||||||| ||| ||||||    
T  67131 ttggaatgtataatcattcatatttaaagtagagggcttgatgctctggaatgtataat 67189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 12622652 - 12622611
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  12622652 tgttcataattgatgaattatgatattatgatgcgaagtcgt 12622611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 19566745 - 19566806
Alignment:
Q  10 aatatgatgttacgtgatgttc---ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||| |||||||    ||||||||||||||||||||||||||||| |||||||    
T  19566745 aatatgatgttacatgatgttgtttataattgatgaattatgatattatgatgcgaagtcgt 19566806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 25512740 - 25512708
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||    
T  25512740 ttgatgaattatgatattatgatgcaaagtcgt 25512708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 55582442 - 55582410
Alignment:
Q  36 ttgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||||    
T  55582442 ttgatgaattatgatattatgatgcaaagtcgt 55582410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 37838746 - 37838781
Alignment:
Q  33 taattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37838746 taattaatgaattatgatattatgatgcaaagtcgt 37838781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 42597475 - 42597510
Alignment:
Q  33 taattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42597475 taattaatgaattatgatattatgatgcaaagtcgt 42597510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 46740352 - 46740311
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||| ||||||||||||||||||||| ||||||| |||||||    
T  46740352 tgtttataattgatgaattatgatatcatgatgcgaagtcgt 46740311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 15242295 - 15242327
Alignment:
Q  33 taattgatgaattatgatattatgatgcaaagt 65  Q
    ||||| |||||||||||||||||||||||||||    
T  15242295 taattaatgaattatgatattatgatgcaaagt 15242327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 44024489 - 44024529
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgc 227  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  44024489 tggaatgtataatcattcatttaaagttgggggtttgatgc 44024529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 45315099 - 45315160
Alignment:
Q  9 gaatatgatgttacgtga---tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||   ||||||||||||||| |||||||||||||||||  |||||||    
T  45315099 gaatatgatgttacatgatgttgttcataattgatg-attatgatattatgatgtgaagtcgt 45315160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 45315285 - 45315341
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  45315285 tggaatgtataatcattcatattaaagttgagggcttgatgctctggaatgtataat 45315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 7949 - 7915
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgtc 69  Q
    |||||||||||||||||||||||||||||||||||    
T  7949 attgatgaattatgatattatgatgcaaagtcgtc 7915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 29044467 - 29044429
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagt 65  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29044467 tgttcatgattgatgaattatgatattatgatgcaaagt 29044429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 19957753 - 19957786
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  19957753 attgatgaattatgatattatgatgcaaagtcgt 19957786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 21686555 - 21686591
Alignment:
Q  32 ataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21686555 ataattgatgaattatgatattatgatgcgaagtcgt 21686591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 22556433 - 22556371
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||| |||||||   ||||||||||||||||| ||| |||||||| |||||||    
T  22556433 gaatatgatgttacatgatgttgttcataattgatgaattataatactatgatgcgaagtcgt 22556371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 19234583 - 19234550
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||| |||||||||||||||||||||    
T  19234583 attgatgaattacgatattatgatgcaaagtcgt 19234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 21680707 - 21680740
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgc 60  Q
    |||| |||||||||||||||||||||||||||||    
T  21680707 tgtttataattgatgaattatgatattatgatgc 21680740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 193 - 252
Alignment:
Q  10 aatatgatgttacgtgatg---ttcataattgatgaattatgatattatgatgcaaagtc 66  Q
    ||||||||||||| |||||   || ||||||||| |||||||||||||||||||||||||    
T  193 aatatgatgttacatgatggtgtttataattgattaattatgatattatgatgcaaagtc 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 4368 - 4401
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  4368 attgatgaattatgatattatgatgcaaagtcgt 4401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 8928 - 8961
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  8928 attgatgaattatgatattatgatgcaaagtcgt 8961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 1911 - 1878
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  1911 attgatgaattatgatattatgatgcaaagtcgt 1878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 3931 - 3898
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  3931 attgatgaattatgatattatgatgcaaagtcgt 3898  T

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Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 7728 - 7761
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  7728 attgatgaattatgatattatgatgcaaagtcgt 7761  T

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Target: scaffold0174 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 15110 - 15054
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||| ||| ||||||    
T  15110 tggaatgtataatcattcatattaaagttgagggtttgatgctctggaatgtataat 15054  T

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Target: scaffold0174; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 15066 - 15010
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||| ||| ||||||    
T  15066 tggaatgtataatcattcatattaaagttgagggcttgatgctctggaatgtataat 15010  T

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Target: scaffold0123 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16239 - 16178
Alignment:
Q  9 gaatatgatgttacgtgatgtt----cataattgatgaattatgatattatgatgcaaagtc 66  Q
    |||||||||||||| |||||||    ||||||||||||||||||||||||| |||| |||||    
T  16239 gaatatgatgttacatgatgttgattcataattgatgaattatgatattataatgcgaagtc 16178  T

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Target: scaffold0230 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 7610 - 7641
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtc 66  Q
    ||||||||||||||||||||||||||||||||    
T  7610 attgatgaattatgatattatgatgcaaagtc 7641  T

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Target: scaffold0230; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 7807 - 7861
Alignment:
Q  189 gaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||||||||||||| |||||| |||||| ||||||||||| ||| ||||||    
T  7807 gaatgtataatcattcatattaaagtagagggcttgatgctctggaatatataat 7861  T

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Target: scaffold0230; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 7892 - 7949
Alignment:
Q  186 ttggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataat 242  Q
    |||||||| |||||||||||| |||||| |||||| ||||||||||| ||| ||||||    
T  7892 ttggaatgaataatcattcatattaaagtagagggcttgatgctctggaatgtataat 7949  T

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Target: scaffold0230; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 7937 - 7982
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctga 232  Q
    |||||||||||||||||||||| |||  ||||| ||||||||||||    
T  7937 tggaatgtataatcattcatttcaagttgagggattgatgctctga 7982  T

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Target: scaffold0371 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 11132 - 11170
Alignment:
Q  30 tcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  11132 tcatgattgatgaattattatattatgatgcaaagtcgt 11170  T

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Target: scaffold0371; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 11250 - 11278
Alignment:
Q  157 ctgagtccatgcatactcatattaagttg 185  Q
    |||||||||||||||||||||||||||||    
T  11250 ctgagtccatgcatactcatattaagttg 11278  T

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Target: scaffold0231 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 18590 - 18620
Alignment:
Q  38 gatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||||||||    
T  18590 gatgaattatgatattatgatgcaaagtcgt 18620  T

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Target: scaffold0213 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 18329 - 18296
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgc 60  Q
    |||| |||||||||||||||||||||||||||||    
T  18329 tgtttataattgatgaattatgatattatgatgc 18296  T

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Target: scaffold0059 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 49242 - 49209
Alignment:
Q  35 attgatgaattatgatattatgatgcaaagtcgt 68  Q
    |||||||||||||||||||||||||| |||||||    
T  49242 attgatgaattatgatattatgatgcgaagtcgt 49209  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 15424 - 15379
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgctctga 232  Q
    |||||||||||||||||||| |||||  ||||| ||||||||||||    
T  15424 tggaatgtataatcattcatataaagttgagggcttgatgctctga 15379  T

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Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 15644 - 15587
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctgaaatttataatt 243  Q
    |||| ||||||||||||||| |||||| |||||| ||||||||||| ||| |||||||    
T  15644 tggattgtataatcattcatattaaagtagagggcttgatgctctggaatgtataatt 15587  T

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Target: scaffold0056; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 15688 - 15643
Alignment:
Q  187 tggaatgtataatcattcat-ttaaagcagagggtttgatgctctg 231  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||    
T  15688 tggaatgtataatcattcatattaaagtagagggcttgatgctctg 15643  T

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Target: scaffold0056; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 15860 - 15819
Alignment:
Q  27 tgttcataattgatgaattatgatattatgatgcaaagtcgt 68  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||    
T  15860 tgttcatgattgatgaattatcatattatgatgcaaattcgt 15819  T

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Target: scaffold0401 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 7946 - 7906
Alignment:
Q  187 tggaatgtataatcattcatttaaagcagagggtttgatgc 227  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  7946 tggaatgtataatcattcatttaaagttgggggtttgatgc 7906  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 62020 - 61966
Alignment:
Q  9 gaatatgatgttacgtgatgtt---cataattgatgaattatgatattatgatgc 60  Q
    |||||||||||||| |||||||   ||||||| ||||||||||||||||| ||||    
T  62020 gaatatgatgttacatgatgttgttcataattaatgaattatgatattataatgc 61966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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